CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54647	Canola	plastid	97.99	97.99
AT3G20440.2	Thale cress	plastid	89.4	89.1
VIT_19s0090g00920.t01	Wine grape	plastid	71.43	71.43
PGSC0003DMT400057446	Potato	cytosol	20.54	71.32
Solyc07g064830.2.1	Tomato	nucleus	68.75	68.22
KRG98710	Soybean	plastid	67.41	67.19
GSMUA_Achr6P13530_001	Banana	plastid	64.84	63.99
EES01041	Sorghum	plastid	62.28	61.59
Os06t0367100-01	Rice	plastid	61.83	61.35
TraesCS7D01G344000.1	Wheat	plastid	62.05	60.83
TraesCS7B01G248000.1	Wheat	plastid	61.94	60.72
TraesCS7A01G336400.1	Wheat	plastid	61.83	60.61
Zm00001d011301_P001	Maize	plastid	60.71	60.51
HORVU7Hr1G082830.1	Barley	plastid	48.44	60.03
HORVU7Hr1G082850.6	Barley	cytosol, plastid	12.72	46.53
CDX70296	Canola	plastid	28.68	30.7
CDY10367	Canola	plastid	28.35	30.35
CDX84127	Canola	plastid	27.9	29.73
CDX75040	Canola	plastid	27.57	29.23
CDY43722	Canola	plastid	27.9	23.7
Zm00001d033399_P001	Maize	endoplasmic reticulum, vacuole	0.67	5.13

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
GO:A0A078GZ15	UniProt:A0A078GZ15	InterPro:Branching_enzy	EnsemblPlants:CDY29828	ProteinID:CDY29828	ProteinID:CDY29828.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0005488	GO:GO:0005975
GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0043169	EnsemblPlantsGene:GSBRNA2T00043725001	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128	PFAM:PF02806
PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF4	MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642
SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniPathway:UPA00164	UniParc:UPI0004EE13A3	SEG:seg

Description

BnaC05g31620DBnaC05g31620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ15]

Coordinates

chrLK032244:-:447152..452941

Molecular Weight (calculated)

103122.0 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.561

Length

896 amino acids

Sequence
(BLAST)

001: MVSLSNQTSF SFYPNNVFVS DKTRLGIPGI NFPRKIKVKV TCFAADQPRQ QKQQKKKKSQ STNSDAESGV DPVGFLTKLG IADRIFAQFL RERHKALKDL
101: KDELLKRHFD LRDLASGFEL LGMHRHMEHR VDFMDWGPGA RYGAIIGDFN GWSPTENSAR EGLFGHDDFG YWFIILEDKL REGEEPEELY FQQYNYVDDY
201: DKGDSGVTAE EVFQRANDEY WEPGEDRFIK NRYEVPAKLY EQLFGPNSPQ TLEDLGEIPD AETRYKQYKE EHKNDPPSNL PPCDIIDDGR GKPYDIYNVV
301: TSPEWTKKFY EKSPPIPYWL ETRKGRKAWL EKYIPAVPHG SKYRLYFNTP DGPLERVPAW ATYVQPEDEG KQAYAIHWEP SPESAYKWKR TKPDKPKSLR
401: IYECHVGISG SEAKISSFEE FTKKVLPHVK RAGYNAIQLI GIPEHKDYYT VGYRVTNFFA VSNRFGTPDD FKRLVDEAHG LGLLVFLDIV HSYAAADQMV
501: GLSLFDGSND CYFHHGKRGH HKHWGTRMFK YGDLDVFHFL ISNLNWWITE YQVDGYQFHS LASMIYTHNG FAPFNSGFDD YCNQYVDRDA LMYLILANEI
601: LHDLHPDIIT IAEDATYYPG LCEPVSQGGL GFDYYVNLSA TEMWVSLLDS VPDSEWSMSK IVSTLVANKE YADKMLSYAE SHNQSISGGR SFAEILLGGV
701: QNENKLLDRG VSLHKMIRLL TFTIGGRAYL NFMGNEFGHP ERVEFPTQSN KFSFSLANRR WDLLESGIHH QLFSFDKDLM DLDKSKGILS RGLPSIHHVN
801: DTNMVISFSR GPFLFIFNFH PSNSYEKYGA GVEEAGEYTM ILNSDEAKYG GQGLLKEDQY LQRSISKRID GQRNCLEVFL PSRTAQVYKL TRILRI

Best Arabidopsis Sequence Match ( AT3G20440.2 )
(BLAST)

001: MVSLSNQTRF SFHPNNLVVS EKRRLGISGV NFPRKIKLKI TCFAAERPRQ EKQKKKSQSQ STSDAEAGVD PVGFLTRLGI ADRIFAQFLR ERHKALKDLK
101: DEIFKRHFDF RDFASGFELL GMHRHMEHRV DFMDWGPGSR YGAIIGDFNG WSPTENAARE GLFGHDDYGY WFIILEDKLR EGEEPDELYF QQYNYVDDYD
201: KGDSGVSAEE IFQKANDEYW EPGEDRFIKN RFEVPAKLYE QMFGPNSPQT LEELGDIPDA ETRYKQWKEE HKDDPPSNLP PCDIIDKGQG KPYDIFNVVT
301: SPEWTKKFYE KEPPIPYWLE TRKGRKAWLQ KYIPAVPHGS KYRLYFNTPD GPLERVPAWA TYVQPEDEGK QAYAIHWEPS PEAAYKWKYS KPKVPESLRI
401: YECHVGISGS EPKVSTFEEF TKKVLPHVKR AGYNAIQLIG VPEHKDYFTV GYRVTNFFAA SSRYGTPDDF KRLVDEAHGL GLLVFLDIVH SYAAADQMVG
501: LSLFDGSNDC YFHYGKRGHH KHWGTRMFKY GDLDVLHFLI SNLNWWITEY QVDGYQFHSL ASMIYTHNGF ASFNNDLDDY CNQYVDRDAL MYLILANEIL
601: HVQHPNIITI AEDATYYPGL CEPVSQGGLG FDYYVNLSAS EMWVSLLDNV PDNEWSMSKI VSTLVANKEY ADKMLSYAEN HNQSISGGRS FAEILFGGVD
701: NGSPGGKELL DRGISLHKMI RLITFTSGGR AYLNFMGNEF GHPERVEFPT QSNNFSFSLA NRRWDLLESG VHHHLFSFDK ELMDLDKSKG ILSRGLPSIH
801: HVNDANMVIS FSRGPFLFIF NFHPSNSYEK YDVGVEEAGE YTMILNSDEV KYGGQGIVTE DHYLQRSISK RIDGQRNCLE VFLPSRTAQV YKLTRILRI

Arabidopsis Description

SBE31,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:D2WL32]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.