CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75040	Canola	plastid	86.92	86.51
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	6.42	81.82
HORVU2Hr1G072500.34	Barley	cytosol	59.45	81.3
GSMUA_Achr5P16760_001	Banana	cytosol	37.1	80.0
AT2G36390.1	Thale cress	plastid	80.5	78.9
CDX70296	Canola	plastid	73.01	73.36
CDY10367	Canola	plastid	72.29	72.64
OQU81503	Sorghum	plastid	68.61	69.77
VIT_08s0007g03750.t01	Wine grape	plastid	70.99	69.5
EES06902	Sorghum	plastid	66.35	69.49
Solyc09g009190.2.1	Tomato	plastid	72.06	69.18
TraesCS2D01G290800.4	Wheat	plastid	67.18	68.48
Os02t0528200-01	Rice	plastid	67.18	68.48
TraesCS2A01G293400.1	Wheat	plastid	67.42	68.48
TraesCS2B01G309500.3	Wheat	plastid	67.3	68.36
KRH67868	Soybean	mitochondrion	70.39	68.05
CDY43722	Canola	plastid	84.42	67.3
GSMUA_Achr6P07530_001	Banana	mitochondrion	67.78	66.9
KRG96156	Soybean	mitochondrion	68.85	66.55
Zm00001d016684_P005	Maize	plastid	63.26	66.25
TraesCS2B01G327300.4	Wheat	golgi	65.52	65.91
HORVU2Hr1G077120.1	Barley	plastid	64.45	65.38
TraesCS2D01G308600.1	Wheat	plastid	64.8	65.19
TraesCS2A01G310300.2	Wheat	plastid	64.57	65.11
Os04t0409200-00	Rice	plastid	18.43	60.78
Zm00001d003817_P002	Maize	plastid	66.94	51.84
CDY54647	Canola	plastid	29.73	27.9
CDY29828	Canola	plastid	29.73	27.9
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	6.66	25.23

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
GO:A0A078D4U0	InterPro:Branching_enzy	EnsemblPlants:CDX84127	ProteinID:CDX84127	ProteinID:CDX84127.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740
GO:GO:0016787	GO:GO:0043169	EnsemblPlantsGene:GSBRNA2T00141135001	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b
InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	PFAM:PF00128
PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF1	MetaCyc:PWY-5067
MetaCyc:PWY-622	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniPathway:UPA00164
UniParc:UPI0004EDB549	:	:	:	:	:

Description

BnaC04g08890D

Coordinates

chrLK031836:-:50337..55814

Molecular Weight (calculated)

95409.7 Da

IEP (calculated)

5.363

GRAVY (calculated)

-0.507

Length

841 amino acids

Sequence
(BLAST)

001: MVYTVSGVRF PHLPSIKNQS LPSFNDDRSR TNAVSFSLRK DTRSSSGKIF ARKPSSSSIA TTASENLGSH QSDSSSAEPQ ETVSQVTQVH DDVDAQKAET
101: EGQKQISALS TSGDKSNQAN TASMSESLDQ KVVQRRIPPP GDGKKIYDID PMLKSYDGHL DYRYGQYIKL REEIDKNEGG LEAFSRGYEI FGFTRSATGI
201: TYREWAPGAK AASLIGDFNN WNSKADVMTR NEYGVWEIFL PNNADGSPAI PHGSRVKIRM DTPSGIKDSI PAWIKYSVQA PGEIPYDGVY YDPAEEDKYV
301: FKHPRPRKPT SLRIYESHVG MSSTEPMINT YANFRDDVLP RIKKLGYNAV QIMAIQEHSY YASFGYHVTN FFAPSSRFGT PDDLKSLIDK AHELGLVVLM
401: DIVHSHASKN TLDGLNMFDG TDGQYFHSGS RGYHWMWDSR LFNYGSWEVL RYLLSNARWW LEEYKFDGFR FDGVTSMMYT HHGLQVEFTG NYNEYFGYST
501: DVDAVVYLML VNDMIHGLYP EAIVVGEDVS GMPAFCIPVQ DGGVGFDYRL HMAVADKWIE LLKKRDEEWQ VGDIVFTLTN RRWGEKCVVY AESHDQALVG
601: DKTIAFWLMD KDMYDFMAVD KQATPRVDRG IALHKMIRLI TMGLGGEGYL NFMGNEFGHP EWIDFPRTDQ HLPDGRVIPG NNGSYDKCRR RFDLGDAEYL
701: RYHGLQEFDR AMQHLEEKYG FMTSEHQYIS RKDEGDRVIV FEKGNLVFVF NFHWTNSYSD YRIGCSVPGK YKIVVDSDDS LFGGFNRLDD SAEFFTSDGR
801: YDDRPCSLMV YSPCRTAVVY AAVDGNEDSS LVPIGLVPDD V

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.