CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.38	92.42
HORVU2Hr1G072500.34	Barley	cytosol	68.68	92.36
GSMUA_Achr5P16760_001	Banana	cytosol	39.54	83.85
TraesCS2D01G290800.4	Wheat	plastid	79.32	79.52
TraesCS2A01G293400.1	Wheat	plastid	79.32	79.23
TraesCS2B01G309500.3	Wheat	plastid	78.84	78.74
EES06902	Sorghum	plastid	73.4	75.59
Os04t0409200-00	Rice	plastid	22.97	74.51
AT5G03650.1	Thale cress	plastid	72.31	74.29
GSMUA_Achr6P07530_001	Banana	mitochondrion	74.49	72.3
CDX70296	Canola	plastid	72.55	71.68
CDY10367	Canola	plastid	72.31	71.45
Bra009521.1-P	Field mustard	plastid	72.79	70.74
VIT_08s0007g03750.t01	Wine grape	plastid	73.04	70.31
KRH67868	Soybean	mitochondrion	73.64	70.0
CDX75040	Canola	plastid	70.25	68.76
KRG96156	Soybean	mitochondrion	72.19	68.62
CDX84127	Canola	plastid	69.77	68.61
Solyc09g009190.2.1	Tomato	plastid	72.67	68.61
Bra005269.1-P	Field mustard	plastid	70.01	68.52
AT2G36390.1	Thale cress	plastid	70.25	67.72
Zm00001d003817_P002	Maize	plastid	84.89	64.64
CDY43722	Canola	plastid	70.13	54.98
OQU77158	Sorghum	plastid	49.21	48.92
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	8.83	32.88
EES01041	Sorghum	plastid	30.35	27.7

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	EntrezGene:8075258
InterPro:A-amylase/branching_C	UniProt:A0A1Z5RCK4	InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169
InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:OQU81503	ProteinID:OQU81503	ProteinID:OQU81503.1	PFAM:PF00128
PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF1	SMART:SM00642
EnsemblPlantsGene:SORBI_3006G066800	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI0001A87348	RefSeq:XP_002447772.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:42707963..42717710

Molecular Weight (calculated)

93165.2 Da

IEP (calculated)

5.236

GRAVY (calculated)

-0.448

Length

827 amino acids

Sequence
(BLAST)

001: MASFAVSGAG ARLGVVRPGG SARSGGGERR SGVDLPSVLF RRKDAISRTV LSCAGAPGKV LVPGGGSDDV LSSAEPVVDT SEQHEELQIP DAEQVVEEKA
101: YSSAAQATSA AAEESSEVDA AIKAKAPLVE EKPRVISPPG DGQRIYEIDP MLEGYRGHLD YRYSEYKRMR AAIDQHEGGL DAFSRGYEKL GFTRSAEGIT
201: YREWAPGASS AALVGDFNNW NPNADAMTRN EYGVWEIFLP NNADGSPAIP HGSRVKIRMD TPSGVKDSIP AWIKFSVQAP GEIPYNGIYY DPPEEEKYVF
301: KHPQPKRPKS LRIYESHIGM SSPEPKINTY ANFRDEVLPR IKRLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRFGTP EDLKSLIDKA HELGLLVLMD
401: IVHSHSSNNT LDGLNGFDGT DTHYFHGGPR GHHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLQVAFTGN YGEYFGFATD
501: VDAVVYLMLV NDLIHGLYPE AVSIGEDVSG MPTFCIPVQD GGVGFDYRLH MAVPDKWIEL LKQSDEYWKM GDIVHTLTNR RWLEKCVTYC ESHDQALVGD
601: KTIAFWLMDK DMYDFMALDR PSTPVIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGPQS LPNGSVIPGN NYSFDKCRRR FDLGDADYLR
701: YRGMQEFDQA MQHLEGKYEF MTSDHSYVSR KHEEDKVIIF ERGDLVFVFN FHWSNSYFDY RVGCFKPGKY KIVLDSDDGL FGGFSRLDHD AEYFTADWPH
801: DNRPCSFSVY APSRTAVVYA PAGEEDE

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.