Factsheet for GSMUA_Achr5P16780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0409200-00	Rice	plastid	20.72	18.04
GSMUA_Achr6P07530_001	Banana	mitochondrion	52.7	13.73
VIT_08s0007g03750.t01	Wine grape	plastid	36.04	9.31
Solyc09g009190.2.1	Tomato	plastid	35.59	9.02
OQU81503	Sorghum	plastid	32.88	8.83
TraesCS2D01G290800.4	Wheat	plastid	31.53	8.48
CDX70296	Canola	plastid	31.53	8.36
CDY10367	Canola	plastid	31.08	8.24
TraesCS2A01G293400.1	Wheat	plastid	30.63	8.21
Bra009521.1-P	Field mustard	plastid	31.08	8.11
TraesCS2B01G309500.3	Wheat	plastid	30.18	8.09
AT5G03650.1	Thale cress	plastid	28.83	7.95
AT2G36390.1	Thale cress	plastid	29.73	7.69
KRG96156	Soybean	mitochondrion	28.83	7.36
KRH67868	Soybean	mitochondrion	28.83	7.36
Os02t0528200-01	Rice	plastid	26.13	7.03
CDX75040	Canola	plastid	26.13	6.86
Bra005269.1-P	Field mustard	plastid	25.68	6.75
CDX84127	Canola	plastid	25.23	6.66
Zm00001d003817_P002	Maize	plastid	32.43	6.63
Zm00001d016684_P005	Maize	plastid	23.87	6.6
EES06902	Sorghum	plastid	23.87	6.6
TraesCS2B01G327300.4	Wheat	golgi	23.42	6.22
TraesCS2D01G308600.1	Wheat	plastid	23.42	6.22
CDY43722	Canola	plastid	27.93	5.88
TraesCS2A01G310300.2	Wheat	plastid	22.07	5.88
HORVU2Hr1G077120.1	Barley	plastid	21.62	5.79
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	14.41	3.98
GSMUA_Achr6P13530_001	Banana	plastid	12.61	3.08
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	0.9	3.03
HORVU2Hr1G072500.34	Barley	cytosol	4.05	1.46
GSMUA_Achr5P16760_001	Banana	cytosol	0.9	0.51

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16780_001	EnsemblPlants:GSMUA_Achr5T16780_001	EnsemblPlantsGene:GSMUA_Achr5G16780_001	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0003844	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:Branching_enzy	KEGG:00500+2.4.1.18	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	SEG:seg	UniParc:UPI00029546AA	UniProt:M0SZ57	MapMan:35.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G16780_001]

Coordinates

chr5:-:15369275..15376267

Molecular Weight (calculated)

24692.3 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.384

Length

222 amino acids

Sequence
(BLAST)

001: MLISGLSQGK VIAKISYDTD PASTVASATG KLLVPGTESD DLSSSTTLNS NKEAASCNLQ VLQETSGVKI EDNIELEAGQ TSISSALIGE ESMNQGDKSS
101: VSSQAKEEVE DVEEKPRFVP PPGTGQRIYE IDPSLKGYRV HLDYRYNQYK KMREMIDQYE GGLEAFSRGY EKFGFQRRLG PRSTRFELRV IHVKILLALY
201: SCDNATCMHV KVNPLFYFIL ML

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.