CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P16770_001	Banana	cytosol, nucleus, plastid	7.01	92.42
KRH67868	Soybean	mitochondrion	91.26	91.26
HORVU2Hr1G072500.34	Barley	cytosol	59.08	83.58
GSMUA_Achr5P16760_001	Banana	cytosol	35.4	78.97
AT5G03650.1	Thale cress	plastid	68.62	74.16
VIT_08s0007g03750.t01	Wine grape	plastid	72.07	72.99
OQU81503	Sorghum	plastid	68.62	72.19
CDY10367	Canola	plastid	69.08	71.8
CDX70296	Canola	plastid	69.08	71.8
TraesCS2D01G290800.4	Wheat	plastid	67.47	71.15
Bra009521.1-P	Field mustard	plastid	69.43	70.98
TraesCS2B01G309500.3	Wheat	plastid	67.47	70.89
TraesCS2A01G293400.1	Wheat	plastid	67.36	70.77
GSMUA_Achr6P07530_001	Banana	mitochondrion	68.39	69.84
EES06902	Sorghum	plastid	64.14	69.49
Solyc09g009190.2.1	Tomato	plastid	69.54	69.06
CDX84127	Canola	plastid	66.55	68.85
Os02t0528200-01	Rice	plastid	65.06	68.61
TraesCS2D01G308600.1	Wheat	plastid	65.63	68.3
Bra005269.1-P	Field mustard	plastid	66.32	68.28
CDX75040	Canola	plastid	66.32	68.28
TraesCS2B01G327300.4	Wheat	golgi	65.52	68.18
AT2G36390.1	Thale cress	plastid	67.24	68.18
TraesCS2A01G310300.2	Wheat	plastid	65.06	67.87
Zm00001d016684_P005	Maize	plastid	62.53	67.75
HORVU2Hr1G077120.1	Barley	plastid	64.48	67.67
Os04t0409200-00	Rice	plastid	18.85	64.31
KRH56220	Soybean	cytosol	4.94	56.58
Zm00001d003817_P002	Maize	plastid	68.97	55.25
CDY43722	Canola	plastid	66.67	54.98
KRH51616	Soybean	cytosol, mitochondrion, vacuole	37.82	50.0
KRH60937	Soybean	plastid	46.21	44.77
GSMUA_Achr5P16780_001	Banana	cytosol, nucleus, plastid	7.36	28.83
KRG98710	Soybean	plastid	29.66	28.7

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100785968	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80
InterPro:A-amylase/branching_C	EMBL:ACUP02012146	InterPro:Branching_enzy	EnsemblPlantsGene:GLYMA_19G192800	GO:GO:0003674	GO:GO:0003824
GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787
GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	UniProt:I1NAK8
InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlants:KRG96156	ProteinID:KRG96156
ProteinID:KRG96156.1	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF1	MetaCyc:PWY-5067	MetaCyc:PWY-622	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445
SUPFAM:SSF81296	UniParc:UPI00023DD2FA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:45047043..45065058

Molecular Weight (calculated)

99136.4 Da

IEP (calculated)

5.976

GRAVY (calculated)

-0.370

Length

870 amino acids

Sequence
(BLAST)

001: MVYTISGIRF PVLPSLHNSR FRGDRRTASL PVFLRNNSFS RKTLALKSSH DSDSLSSAIA KSDKVLIPQD QDNSASLTDQ LETPDITSED TQNLEDLTME
101: DEDKYNISEA ASSYRHIEDG QGSVVSSLVD VNIPAKKASV SVGRKSKIVS DEVKPKIIPP PGTGQKIYEI DPSLLAHRDH LDFRYGQYKR LCYEIDKHEG
201: GLDTFSRGYE KFGFIRSATG ITYREWAPGA KSAALIGDFN NWNPNADVMT RNEFGVWEIF LPNNVDGSPP IPHGSRVKIR MDTPSGIKDS IPAWIKFSVQ
301: APGEIPYSGI YYDPPEEEKY VFKHPQPKRP KSLRIYESHI GMSSPEPKIN TYVNFRDDVL PRIKRLGYNA VQIMAIQEHS YYASFGYHVT NFFAPSSRFG
401: TPEELKSLID RAHELGLLVL MDIVHSHASN NTLDGLNMFD GTDGHYFHPG SRGYHWMWDS RLFNYGSWEV LRYLLSNARW WLDEYKFDGF RFDGVTSMMY
501: THHGLEVAFT GNYNEYFGFA TDVDAVVYLM LTNDVIHGLF PEAVTIGEDV SGMPTFCLPT QDGGIGFDYR LHMAIADKWI EILKKNDEDW KMGDIIHTLT
601: NRRWLEKCVA YAESHDQALV GDKTIAFWLM DKDMYDFMAL DRPSTPIIDR GIALHKMIRL ITMGLGGEGY LNFMGNEFGH PEWIDFPRGD QHLPNGVVVP
701: GNNNSFDKCR RRFDLGDADY LRYQGMQEFD QAMQHLEEKF GFMTAEHQYI SRKNEGDKII VFERGNLIFV FNFHWTNSYS DYRVGCSTPG KYKIVLDSDD
801: ALFGGFSRLN HAAEYFTSVW NFSKLVSECA PCSGMDTPSV LLCCVLFVFP IRVLLHSCRP NFIILTIPME

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.