Factsheet for Solyc04g082400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025846	Potato	cytosol	92.65	85.56
Zm00001d036363_P001	Maize	plastid	25.47	77.06
VIT_18s0001g00060.t01	Wine grape	plastid	71.68	72.02
KRH51616	Soybean	cytosol, mitochondrion, vacuole	55.92	71.73
KRH60937	Soybean	plastid	73.58	69.15
TraesCS7B01G472500.1	Wheat	plastid	64.45	68.17
Os06t0726400-01	Rice	plastid	66.0	67.93
Zm00001d014844_P005	Maize	plastid	66.23	67.92
OQU77158	Sorghum	plastid	66.47	67.43
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	64.1	67.29
HORVU0Hr1G022790.5	Barley	cytosol, plastid	40.64	67.25
TraesCS7D01G535400.2	Wheat	golgi	64.69	65.78
TraesCS7A01G549100.2	Wheat	plastid	64.93	64.78
TraesCS7A01G549200.1	Wheat	plastid	44.55	59.21
TraesCS7B01G472400.1	Wheat	plastid	43.84	58.54
TraesCS7D01G535500.1	Wheat	plastid	44.55	57.85
HORVU0Hr1G022810.3	Barley	mitochondrion	64.81	56.92
HORVU0Hr1G022780.8	Barley	cytosol, plastid	39.93	55.79
TraesCS7B01G472300.1	Wheat	plastid	41.11	54.05
TraesCS7A01G549300.2	Wheat	plastid	40.64	53.18
TraesCS7D01G535600.4	Wheat	plastid	40.52	50.29
Solyc09g009190.2.1	Tomato	plastid	48.93	47.15
Solyc07g064830.2.1	Tomato	nucleus	30.33	28.35

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:K4BVW7	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651
PANTHER:PTHR43651:SF2	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:Solyc04g082400.2
EnsemblPlants:Solyc04g082400.2.1	UniParc:UPI0002766682	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:66068843..66076522

Molecular Weight (calculated)

96342.9 Da

IEP (calculated)

5.995

GRAVY (calculated)

-0.526

Length

844 amino acids

Sequence
(BLAST)

001: MEINFNVLSK PIRGSFPFSS PRVSPRASRT KICFPSQHST GLKFGSEGRS WDISSTPKSR VRKDERMKHS SAISAVLTND NSTMASREED VKTENIGLLN
101: LDPALEPYLD HFRYRMKRYV DQKMLIQKYE GGLEEFAQGY LKFGFNREDG CIVYREWAPA AQEAEVIGDF NGWNGSNHMM EKDQFGVWSI RIPDVDSKPA
201: IPHNSRVKFR FKHGEGAWVD RIPAWIKYAT VDATKFAAPY DGVYWDPPPS ERYNFKYPRP SKPRAPRIYE AHVGMSSSEP RVNSYREFAD DVLPRIKANN
301: YNTVQLMAIM EHSYYGSFGY HVTNFFAVSS RSGNPEDLKY LIDKAHSLGL QVLVDVVHSH ASNNVTDGLN GFDIGQGSQE SYFHAGERGY HKLWDSRLFN
401: YANWEVLRFL LSNLRWWLEE YNFDGFRFDG ITSMLYVHHG INMGFTGNYN EYFSEATDVD AVVYLMLANN LIHKIFPDAT VIAEDVSGMP GLGRHVSEGG
501: IGFDYRLAMA IPDKWIDYVK NKNDEDWSMK EVTSSLTNRR YTEKCIAYAE SHDQSIVGDK TIAFLLMDKE MYSGMSCLTD ASPVVDRGIA LHKMIHFFTM
601: ALGGEGYLNF MGNEFGHPEW IDFPREGNNW SYDKCRRQWN LADSQHLRYK FMNAFDRAMN SLDEKFSFLA SGKQIVSSID DDNKVVVFER GDLVFVFNFH
701: PNNTYEGYKV GCDLPGKYRV ALDSDAWEFG GHGRVGHDVD HFTSPEGIPG VPETNFNGRP NSFKLLSPAH TCVAYYRVDE CMSETEVYQT DISNELLPTA
801: NIEESDEKLK DSLSTNISNI GQTVVASVEE RDKELKDSPI CKHH

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.