Factsheet for TraesCS7D01G535400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G472500.1	Wheat	plastid	93.73	97.49
TraesCS7A01G549100.2	Wheat	plastid	96.63	94.8
Zm00001d036363_P001	Maize	plastid	29.28	87.1
HORVU0Hr1G022810.3	Barley	mitochondrion	92.41	79.81
Os06t0726400-01	Rice	plastid	78.31	79.27
OQU77158	Sorghum	plastid	79.04	78.85
Zm00001d014844_P005	Maize	plastid	77.47	78.13
TraesCS7D01G535500.1	Wheat	plastid	56.27	71.85
VIT_18s0001g00060.t01	Wine grape	plastid	66.14	65.36
Solyc04g082400.2.1	Tomato	plastid	65.78	64.69
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	62.53	64.55
TraesCS7D01G535600.4	Wheat	plastid	51.93	63.38
KRH51616	Soybean	cytosol, mitochondrion, vacuole	49.4	62.31
KRH60937	Soybean	plastid	64.82	59.91
PGSC0003DMT400025846	Potato	cytosol	65.78	59.74
TraesCS2D01G290800.4	Wheat	plastid	48.92	49.21
TraesCS2D01G308600.1	Wheat	plastid	49.16	48.8
TraesCS7D01G344000.1	Wheat	plastid	31.45	28.56

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF2
SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296	EnsemblPlantsGene:TraesCS7D01G535400	EnsemblPlants:TraesCS7D01G535400.2
TIGR:cd02854	TIGR:cd11321	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:627322122..627327437

Molecular Weight (calculated)

93582.1 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.522

Length

830 amino acids

Sequence
(BLAST)

001: MLCLTAPSCS PSLPPRPSRP AADRPGPGIS GGGNVRLSAV PAPSSLRWSW PRKAKSKFSV PVSAPRDYTM ATAEDGVGDL PIYDLDPKFA GFKEHFSYRM
101: KKYLDQKHSI EKHEGGLEEF SKGYLKFGIN TENDATVYRE WAPAAMDAQL IGDFNNWNGS GHRMTKDNYG VWSIRISHVN GKPAIPHNSK VKFRFHRGDG
201: LWVDRVPAWI RYATFDASKF GAPYDGVHWD PPSGERYVFK HPRPRKPDAP RIYEAHVGMS GEKPEVSTYR EFADNVLPRI KANNYNTVQL MAIMEHSYYA
301: SFGYHVTNFF AVSSRSGTPE DLKYLVDKAH SLGLRVLMDV VHSHASSNKT DGLNGYDVGQ NTQESYFHTG ERGYHKLWDS RLFNYANWEV LRFLLSNLRY
401: WMDEFMFDGF RFDGVTSMLY NHHGINMSFA GSYKEYFGLD TDVDAVVYLM LANHLMHKLL PEATVVAEDV SGMPVLCRSV DEGGVGFDYR LAMAIPDRWI
501: DYLKNKDDLE WSMSGIAHTL TNRRYTEKCI AYAESHDQSI VGDKTMAFLL MDKEMYTGMS DLQPASPTID RGIALQKMIH FITMALGGDG YLNFMGNEFG
601: HPEWIDFPRE GNNWSYDKCR RQWSLADIDH LRYKYMNAFD QAMNALDDKF SFLSSSKQIV SDMNEEKKII VFERGDLVFV FNFHPSKTYD GYKVGCDLPG
701: KYKVALDSDA LMFGGHGRVA HDNDHFTSPE GVPGVPETNF NNRPNSFKIL SPSRTCVAYY RVEEKAEKPK DEGAASWGKT ALGYIDVEAT GVKDAADGEA
801: TSGSEKASTG GDSSKKGINF VFLSPDKDNK

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.