Factsheet for VIT_18s0001g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036363_P001	Maize	plastid	25.95	78.14
Solyc04g082400.2.1	Tomato	plastid	72.02	71.68
KRH51616	Soybean	cytosol, mitochondrion, vacuole	55.83	71.28
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	66.55	69.53
KRH60937	Soybean	plastid	74.05	69.27
OQU77158	Sorghum	plastid	68.45	69.11
Zm00001d014844_P005	Maize	plastid	67.62	69.02
TraesCS7B01G472500.1	Wheat	plastid	65.0	68.42
Os06t0726400-01	Rice	plastid	66.55	68.17
HORVU0Hr1G022790.5	Barley	cytosol, plastid	40.83	67.25
PGSC0003DMT400025846	Potato	cytosol	72.14	66.3
TraesCS7D01G535400.2	Wheat	golgi	65.36	66.14
TraesCS7A01G549100.2	Wheat	plastid	65.95	65.48
TraesCS7B01G472400.1	Wheat	plastid	45.48	60.44
TraesCS7A01G549200.1	Wheat	plastid	45.6	60.31
TraesCS7D01G535500.1	Wheat	plastid	45.95	59.38
HORVU0Hr1G022780.8	Barley	cytosol, plastid	42.02	58.44
HORVU0Hr1G022810.3	Barley	mitochondrion	65.48	57.23
TraesCS7B01G472300.1	Wheat	plastid	42.98	56.23
TraesCS7A01G549300.2	Wheat	plastid	42.5	55.35
TraesCS7D01G535600.4	Wheat	plastid	42.5	52.5
VIT_08s0007g03750.t01	Wine grape	plastid	48.33	47.26
VIT_19s0090g00920.t01	Wine grape	plastid	30.36	28.46

Protein Annotations

KEGG:00500+2.4.1.18	EntrezGene:100257371	wikigene:100257371	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5
Gene3D:3.20.20.80	InterPro:A-amylase/branching_C	InterPro:Branching_enzy	ProteinID:CBI18866	ProteinID:CBI18866.3	UniProt:E0CQR2
EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0043169	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
EntrezGene:LOC100257371	wikigene:LOC100257371	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463
PANTHER:PTHR43651	PANTHER:PTHR43651:SF2	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
TIGR:TC63523	UniParc:UPI0001BE174F	ArrayExpress:VIT_18s0001g00060	EnsemblPlantsGene:VIT_18s0001g00060	EnsemblPlants:VIT_18s0001g00060.t01	unigene:Vvi.41
RefSeq:XP_002284841	RefSeq:XP_002284841.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:1101792..1110665

Molecular Weight (calculated)

95168.0 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.510

Length

840 amino acids

Sequence
(BLAST)

001: MYGSVGLFST PLLGSSSTPS SRNHYKTGSG NKYCLAKQQP IRVSNGPRLQ KLLGHCTFHC PSRNSTYGKV NGSAISALIT DDNSAMATMG EDTEHIGILD
101: TDPGLEPFKD HFRYRMRRYV EQKELIEKYE GSLEEFAQGY LKFGFNREEG GIVYREWAPA AQEAQVIGDF NGWDGSNHRM ERNQFGVWSI KIPDSGGNPA
201: IPHNSRVKFR FKHGDGVWVD RIPAWIRYAT VDPTAFAAPY DGVYWDPPPS ERYQFKYPCP SKPNAPRIYE AHVGMSSSEP RVNSYREFAD DILPRIRANN
301: YNTVQLMAVM EHSYYASFGY HVTNFFAVSS RSGTPEDLKY LIDKAHSLGL RVLMDVVHSH ASNNVTDGLN GFDVGQSSQD SYFHTGDRGY HELWDSKLFN
401: YANWEVLRFL ISNLRWWLEE FKFDGFRFDG VTSMLYHHHG VNMTFTGNYN EYFSEATDVD AVVYLMLANC LIHKIFPDAT VSAEDVSGMP GLGRPVAEGG
501: TGFDYRLAMA IPDKWIDYLK NKKDEEWSMK EISSSLTNRR YAEKCISYAE SHDQALVGDK TIAFLLMDKE MYSGMSCLTD ASPTIDRGIS LHKMIHFITM
601: ALGGEGFLNF MGNEFGHPEW IDFPREGNDW SYEKCRRQWE LVDTDHLRYK YMNAFDTAMN LLDEKFSFLA STKQIVSSTD EEHKVIVFER GDLVFVFNFH
701: PENTYDGYKV GCDLPGKYRV ALDSDACVFG GQGRVGHDAD HFTSPEGIPG VPETNFNNRP NSFKVLSPAR TCVVYYRVEE SLEESDDDHN STGANATLVA
801: DVVAEQESLE EPASVKDHEF KPRLIEGSEV EDVVEEATDD

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.