Factsheet for Os06t0726400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036363_P001	Maize	plastid	29.88	87.81
TraesCS7B01G472500.1	Wheat	plastid	78.41	80.58
Zm00001d014844_P005	Maize	plastid	80.24	79.95
OQU77158	Sorghum	plastid	80.37	79.21
TraesCS7D01G535400.2	Wheat	golgi	79.27	78.31
TraesCS7A01G549100.2	Wheat	plastid	79.76	77.31
HORVU0Hr1G022790.5	Barley	cytosol, plastid	47.8	76.86
TraesCS7B01G472400.1	Wheat	plastid	55.98	72.63
TraesCS7A01G549200.1	Wheat	plastid	56.1	72.44
TraesCS7D01G535500.1	Wheat	plastid	56.83	71.69
HORVU0Hr1G022810.3	Barley	mitochondrion	78.41	66.91
HORVU0Hr1G022780.8	Barley	cytosol, plastid	49.02	66.56
VIT_18s0001g00060.t01	Wine grape	plastid	68.17	66.55
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	65.12	66.42
Solyc04g082400.2.1	Tomato	plastid	67.93	66.0
TraesCS7A01G549300.2	Wheat	plastid	50.98	64.81
TraesCS7B01G472300.1	Wheat	plastid	50.49	64.49
KRH51616	Soybean	cytosol, mitochondrion, vacuole	51.46	64.13
TraesCS7D01G535600.4	Wheat	plastid	51.34	61.91
KRH60937	Soybean	plastid	67.44	61.58
PGSC0003DMT400025846	Potato	cytosol	68.17	61.16
Os02t0528200-01	Rice	plastid	49.76	49.45
Os04t0409200-00	Rice	plastid	10.24	32.94
Os06t0367100-01	Rice	plastid	30.98	28.13

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	PDB:3AMK
PDB:3AML	PDB:3VU2	EntrezGene:4342117	InterPro:A-amylase/branching_C	ProteinID:ACY56114.1	ProteinID:ACY56115.1
ProteinID:ACY56116.1	ProteinID:ACY56117.1	ProteinID:ACY56118.1	ProteinID:ACY56119.1	EMBL:AF136268	EMBL:AK068920
EMBL:AY302112	ProteinID:BAA01616.1	ProteinID:BAD61712.1	ProteinID:BAD61713.1	ProteinID:BAD61804.1	ProteinID:BAD61805.1
ProteinID:BAF20543.1	ProteinID:BAS99598.1	InterPro:Branching_enzy	EMBL:D10752	EMBL:D11082	EMBL:EF122470
GO:GO:0003674	GO:GO:0003824	GO:GO:0003844	GO:GO:0004553	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0005982
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0016787	GO:GO:0019252
GO:GO:0043169	GO:GO:0102752	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom	InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF
InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set	EnsemblPlantsGene:Os06g0726400	EnsemblPlants:Os06t0726400-01
PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF2
UniProt:Q01401	UniProt:Q0D9D0	SMART:SM00642	SUPFAM:SSF51011	SUPFAM:SSF51445	SUPFAM:SSF81296
UniParc:UPI00000AD081	RefSeq:XP_015643111.1	RefSeq:XP_015643112.1	RefSeq:XP_015643113.1	SEG:seg	:

Description

STARCH BRANCHING ENZYME 1Branching enzyme-I precursor (Starch-branching enzyme I) (1,4-alpha- glucan branching enzyme I). (Os06t0726400-01);Similar to 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic. (Os06t0726400-02);Hypothetical conserved gene. (Os06t0726400-03);Similar to 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic. (Os06t0726400-04)

Coordinates

chr6:-:30897378..30905803

Molecular Weight (calculated)

93241.3 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.491

Length

820 amino acids

Sequence
(BLAST)

001: MLCLTSSSSS APAPLLPSLA DRPSPGIAGG GGNVRLSVVS SPRRSWPGKV KTNFSVPATA RKNKTMVTVV EEVDHLPIYD LDPKLEEFKD HFNYRIKRYL
101: DQKCLIEKHE GGLEEFSKGY LKFGINTVDG ATIYREWAPA AQEAQLIGEF NNWNGAKHKM EKDKFGIWSI KISHVNGKPA IPHNSKVKFR FRHGGGAWVD
201: RIPAWIRYAT FDASKFGAPY DGVHWDPPAC ERYVFKHPRP PKPDAPRIYE AHVGMSGEEP EVSTYREFAD NVLPRIRANN YNTVQLMAIM EHSYYASFGY
301: HVTNFFAVSS RSGTPEDLKY LVDKAHSLGL RVLMDVVHSH ASNNVTDGLN GYDVGQNTHE SYFHTGDRGY HKLWDSRLFN YANWEVLRFL LSNLRYWMDE
401: FMFDGFRFDG VTSMLYHHHG INKGFTGNYK EYFSLDTDVD AIVYMMLANH LMHKLLPEAT IVAEDVSGMP VLCRPVDEGG VGFDFRLAMA IPDRWIDYLK
501: NKEDRKWSMS EIVQTLTNRR YTEKCIAYAE SHDQSIVGDK TIAFLLMDKE MYTGMSDLQP ASPTINRGIA LQKMIHFITM ALGGDGYLNF MGNEFGHPEW
601: IDFPREGNNW SYDKCRRQWS LVDTDHLRYK YMNAFDQAMN ALEEEFSFLS SSKQIVSDMN EKDKVIVFER GDLVFVFNFH PNKTYKGYKV GCDLPGKYRV
701: ALDSDALVFG GHGRVGHDVD HFTSPEGMPG VPETNFNNRP NSFKVLSPPR TCVAYYRVDE DREELRRGGA VASGKIVTEY IDVEATSGET ISGGWKGSEK
801: DDCGKKGMKF VFRSSDEDCK

Best Arabidopsis Sequence Match ( AT5G03650.1 )
(BLAST)

001: MVVIHGVSLT PRFTLPSRPL NTGFNAGNST LSFFFKKHPL SRKIFAGKQS AEFDSSSQAI SASEKVLVPD NLDDDPRGFS QIFDLESQTM EYTEAVRTED
101: QTMNVVKERG VKPRIVPPPG DGKKIYEIDP MLRTYNNHLD YRYGQYKRLR EEIDKYEGGL EAFSRGYEKL GFSRSDAGIT YREWAPGAKA ASLIGDFNNW
201: NSNADIMTRN EFGVWEIFLP NNTDGSPAIP HGSRVKIRMD TPSGIKDSIP AWIKFSVQAP GEIPFNGIYY DPPEEEKYVF KHPQPKRPKS LRIYEAHVGM
301: SSTEPMVNTY ANFRDDVLPR IKKLGYNAVQ IMAIQEHSYY ASFGYHVTNF FAPSSRCGTP EELKSLIDRA HELGLVVLMD IVHSHASKNT LDGLNMFDGT
401: DAHYFHSGPR GYHWMWDSRL FNYGSWEVLR YLLSNARWWL EEYKFDGFRF DGVTSMMYTH HGLSVGFTGN YTEYFGLETD VDAVNYLMLV NDMIHGLYPE
501: AITVGEDVSG MPTFCIPVQD GGVGFDYRLH MAIADKWIEM LKKRDEDWQM GDIIYTLTNR RWSEKCISYA ESHDQALVGD KTIAFWLMDK DMYDFMAVDR
601: PSTPLIDRGI ALHKMIRLIT MGLGGEGYLN FMGNEFGHPE WIDFPRGEQR LSDGSVIPGN NFSYDKCRRR FDLGDADYLR YRGLQEFDQA MQHLEENYGF
701: MTSEHQFISR KDEADRVIVF ERGDLVFVFN FHWTSSYFDY RIGCSKPGKY KIVLDSDDPL FGGFNRLDRK AEYFTYDGLY DERPCSFMVY APCRTAVVYA
801: LANHD

Arabidopsis Description

SBE2.21,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.