Factsheet for PGSC0003DMT400025846

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
vacuole 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082400.2.1	Tomato	plastid	85.56	92.65
Zm00001d036363_P001	Maize	plastid	23.41	76.7
VIT_18s0001g00060.t01	Wine grape	plastid	66.3	72.14
KRH51616	Soybean	cytosol, mitochondrion, vacuole	51.42	71.43
KRH60937	Soybean	plastid	68.49	69.71
Os06t0726400-01	Rice	plastid	61.16	68.17
Zm00001d014844_P005	Maize	plastid	61.16	67.92
TraesCS7B01G472500.1	Wheat	plastid	59.3	67.92
OQU77158	Sorghum	plastid	61.71	67.79
GSMUA_Achr4P04690_001	Banana	cytoskeleton, cytosol, vacuole	59.63	67.79
HORVU0Hr1G022790.5	Barley	cytosol, plastid	37.64	67.45
TraesCS7D01G535400.2	Wheat	golgi	59.74	65.78
TraesCS7A01G549100.2	Wheat	plastid	60.18	65.01
TraesCS7A01G549200.1	Wheat	plastid	41.03	59.06
TraesCS7B01G472400.1	Wheat	plastid	40.59	58.7
TraesCS7D01G535500.1	Wheat	plastid	41.14	57.85
HORVU0Hr1G022810.3	Barley	mitochondrion	60.28	57.34
HORVU0Hr1G022780.8	Barley	cytosol, plastid	36.54	55.3
TraesCS7B01G472300.1	Wheat	plastid	37.75	53.74
TraesCS7A01G549300.2	Wheat	plastid	37.31	52.87
TraesCS7D01G535600.4	Wheat	plastid	37.31	50.15
PGSC0003DMT400057446	Potato	cytosol	9.63	34.11

Protein Annotations

KEGG:00500+2.4.1.18	Gene3D:2.60.40.10	Gene3D:2.60.40.1180	MapMan:3.2.2.5	Gene3D:3.20.20.80	InterPro:A-amylase/branching_C
InterPro:Branching_enzy	ProteinID:CAA70038	ProteinID:CAA70038.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003844
GO:GO:0004553	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757
GO:GO:0016787	GO:GO:0019252	GO:GO:0043169	GO:GO:0102752	InterPro:Glyco_hydro_13_N	InterPro:Glyco_hydro_13_cat_dom
InterPro:Glyco_hydro_b	InterPro:Glycoside_hydrolase_SF	InterPro:IPR013780	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Ig_E-set
UniProt:M1AM70	PFAM:PF00128	PFAM:PF02806	PFAM:PF02922	EnsemblPlantsGene:PGSC0003DMG400009981	PGSC:PGSC0003DMG400009981
EnsemblPlants:PGSC0003DMT400025846	PIRSF:PIRSF000463	PANTHER:PTHR43651	PANTHER:PTHR43651:SF2	SMART:SM00642	SUPFAM:SSF51011
SUPFAM:SSF51445	SUPFAM:SSF81296	UniParc:UPI000294FC17	EMBL:Y08786	SEG:seg	:

Description

1,4-alpha-glucan branching enzyme [Source:PGSC_GENE;Acc:PGSC0003DMG400009981]

Coordinates

chr4:-:71587812..71595758

Molecular Weight (calculated)

104170.0 Da

IEP (calculated)

4.898

GRAVY (calculated)

-0.556

Length

914 amino acids

Sequence
(BLAST)

001: MEINFNVLSK PIRGSFPSFS PKVSSGASRN KICFPSQHST GLKFGSQERS WDISSTPKSR VRKDERMKHS SAISAVLTDD NSTMAPLEED VKTENIGLLN
101: LDPTLEPYLD HFRHRMKRYV DQKMLIEKYE GPLEEFAQGY LKFGFNREDG CIVYREWAPA AQEAEVIGDF NGWNGSNHMM EKDQFGVWSI RIPDVDSKPV
201: IPHNSRVKFR FKHGNGVWVD RIPAWIKYAT ADATKFAAPY DGVYWDPPPS ERYHFKYPRP PKPRAPRIYE AHVGMSSSEP RVNSYREFAD DVLPRIKANN
301: YNTVQLMAIM EHSYYGSFGY HVTNFFAVSN RYGNPEDLKY LIDKAHSLGL QVLVDVVHSH ASNNVTDGLN GFDIGQGSQE SYFHAGERGY HKLWDSRLFN
401: YANWEVLRFL LSNLRWWLEE YNFDGFRFDG ITSMLYVHHG INMGFTGNYN EYFSEATDVD AVVYLMLANN LIHKIFPDAT VIAEDVSGMP GLSRPVSEGG
501: IGFDYRLAMA IPDKWIDYLK NKNDEDWSMK EVTSSLTNRR YTEKCIAYAE SHDQSIVGDK TIAFLLMDKE MYSGMSCLTD ASPVVDRGIA LHKMIHFFTM
601: ALGGEGYLNF MGNEFGHPEW IDFPREGNNW SYDKCRRQWN LADSEHLRYK FMNAFDRAMN SLDEKFSFLA SGKQIVSSMD DDNKVVVFER GDLVFVFNFH
701: PNNTYEGYKV GCDLPGKYRV ALDSDAWEFG GHGRAGHDVD HFTSPEGIPG VPETNFNGRP NSFKVLSPAR TCVAYYRVDE RMSETEDYQT DICSELLPTA
801: NIEESDEKLK DSSSTNISTS STKNAYYRVD ERMSEAEDYQ TDICSELLPT ANIEESDEKL DDSLSTNISN IGQTVVVSVE ERDKELKDSP SVSIISDAVP
901: AEWADSDANV WGED

Best Arabidopsis Sequence Match ( AT2G36390.1 )
(BLAST)

001: MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL
101: GNVDVQKTEE AQETETLDQT SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ YRKLREEIDK NEGGLEAFSR
201: GYEIFGFTRS ATGITYREWA PGAKAASLIG DFNNWNAKSD VMARNDFGVW EIFLPNNADG SPAIPHGSRV KIRMDTPSGI KDSIPAWIKY SVQPPGEIPY
301: NGVYYDPPEE DKYAFKHPRP KKPTSLRIYE SHVGMSSTEP KINTYANFRD DVLPRIKKLG YNAVQIMAIQ EHAYYASFGY HVTNFFAPSS RFGTPDDLKS
401: LIDKAHELGL VVLMDIVHSH ASKNTLDGLD MFDGTDGQYF HSGSRGYHWM WDSRLFNYGS WEVLRYLLSN ARWWLEEYKF DGFRFDGVTS MMYTHHGLQV
501: EFTGNYNEYF GYSTDVDAVV YLMLVNDLIH GLYPEAIVVG EDVSGMPAFC VPVEDGGVGF DYRLHMAVAD KWIELLKKRD EDWQVGDITF TLTNRRWGEK
601: CVVYAESHDQ ALVGDKTIAF WLMDKDMYDF MAVDRQATPR VDRGIALHKM IRLITMGLGG EGYLNFMGNE FGHPEWIDFP RTDQHLPDGR VIAGNNGSYD
701: KCRRRFDLGD AEYLRYHGLQ EFDRAMQNLE ETYGFMTSEH QYISRKDEGD RVIVFERGNL LFVFNFHWTN SYSDYRIGCS VPGKYKIVLD SDNSLFGGFN
801: RLDDSAEFFT SDGRHDDRPC SFMVYAPCRT AVVYAAVDDD DDDERSSLVP IGLLPEDV

Arabidopsis Description

SBE2.1SBE2.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.