Factsheet for Zm00001d018649_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d020359_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61290.1	Zm00001d020359_P003	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018650_P001	Maize	cytosol	70.54	73.43
EER97845	Sorghum	cytosol	62.24	71.09
EER95747	Sorghum	cytosol	68.05	69.34
Zm00001d018652_P001	Maize	endoplasmic reticulum	63.49	64.15
Zm00001d018648_P001	Maize	cytosol	62.03	60.04
Os07t0112000-00	Rice	cytosol	56.02	56.37
Os01t0368000-00	Rice	cytosol	52.7	55.46
Os07t0111700-01	Rice	cytosol, peroxisome	53.53	55.25
Os07t0111900-00	Rice	extracellular	54.15	54.83
Os06t0528700-01	Rice	plasma membrane	54.15	53.81
CDX99030	Canola	cytosol, mitochondrion, peroxisome, plastid	45.64	48.57
PGSC0003DMT400063125	Potato	cytosol, peroxisome, plastid	45.64	48.35
CDX69991	Canola	cytosol, mitochondrion, peroxisome, plastid	45.23	48.12
CDY40773	Canola	mitochondrion	45.64	47.93
Solyc03g115560.2.1	Tomato	cytosol, peroxisome, plastid	45.23	47.91
CDY14028	Canola	cytosol, mitochondrion, peroxisome, plastid	45.44	47.71
Bra009308.1-P	Field mustard	cytosol, mitochondrion, peroxisome	45.44	47.51
Bra028683.1-P	Field mustard	mitochondrion	45.23	47.49
Bra012970.1-P	Field mustard	cytosol	43.98	47.43
AT5G07800.1	Thale cress	cytosol	44.81	46.96
VIT_17s0000g06790.t01	Wine grape	cytosol, peroxisome, plastid	43.98	46.7
CDY23071	Canola	cytosol	44.4	46.32
Bra012971.1-P	Field mustard	cytosol	44.19	46.3
CDY02157	Canola	cytosol	44.19	46.1
CDY02158	Canola	cytosol	37.97	45.64
KRH55196	Soybean	cytosol, mitochondrion, peroxisome	10.79	45.61
AT5G61290.1	Thale cress	cytosol	43.57	45.55
CDY23072	Canola	cytosol	37.76	45.39
Zm00001d029924_P001	Maize	mitochondrion	35.68	39.63
Zm00001d029865_P001	Maize	mitochondrion	36.1	39.55
Zm00001d046637_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	9.54	38.02
Zm00001d027286_P001	Maize	cytosol	27.8	34.99
Zm00001d029922_P001	Maize	mitochondrion	31.54	31.73
VIT_17s0000g06780.t01	Wine grape	cytosol, peroxisome, plastid	45.85	20.73

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	UniProt:A0A1D6HR89	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0004499	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114
InterPro:IPR036188	ProteinID:ONM51028.1	PFAM:PF00743	PIRSF:PIRSF000332	PRINTS:PR00370	PANTHER:PTHR23023
PANTHER:PTHR23023:SF86	SUPFAM:SSF51905	UniParc:UPI0008432906	EnsemblPlantsGene:Zm00001d018649	EnsemblPlants:Zm00001d018649_P001	EnsemblPlants:Zm00001d018649_T001
SEG:seg	:	:	:	:	:

Description

FAD/NAD(P)-binding oxidoreductase family protein

Coordinates

chr7:+:1671584..1673521

Molecular Weight (calculated)

53516.0 Da

IEP (calculated)

6.744

GRAVY (calculated)

-0.339

Length

482 amino acids

Sequence
(BLAST)

001: MASSSKKVCV VGAGVSGLVS ARELRREGHD VTVMEQSGGI GGQWLYDPRT DADDALGAHS SIYASLRLNT PRESTGFSDF PFAYPSNDDG AGDGRRYPGH
101: AEFLRYIRRF CDAFGLMDAV RLNTKVLHVA PLAPRSHGDG VTRWTVRCSS RLGDCQDEAV TTEETFDAVV VAVGQFTQPR LPAINGMDKW SRRQLHSRSY
201: RVPDSFENQV VVVVGCQASG VDIALELRTV ARDVHISVKS VDDDVAVSPG MRKAVSRHHN LHLHVQASFC CGLFVDIYNS PEDRQECMCL CRSIACARTG
301: MWCSPMAPRW SPTPSSTAPG ERATSLYQMY VYSFPFLDTG GLVTVDDSCV GPLFEHTFPP ALAPALSFVG VPKKVVVPRF FEAQARWVAQ VLSGRRSLPP
401: EAEMLRSAEE NNRARGKHLA HDILDDYDYC DDFGEKHCGF PRLEGWKKEL RWSSLARRHD STESFRDVYH DDSNLIREGF QA

Best Arabidopsis Sequence Match ( AT1G12160.1 )
(BLAST)

001: MTSVITSRAR HVAVIGLGAA GLVAVRELRR EGHTVIGFER EKHVGGLWVY TDRVDSDSVS VDPDRTIVHS SIYQSLRTNL PRECMGYSDF PFVTRSSDGD
101: PRRYPDHREV LMYLQDFAKE FKIEDMIRFE TEVLCVEPSP ENNRKWRVQF KSSNGVSGEE IFDAVVVCNG HFTEPRLAHI PGIESWPGKQ IHSHNYRIPD
201: PFKDEVVIVI GSQASGNDIS TDIATIAKEV HISSKMVASD SYGCYDNLRI HPTIYRARED GSVVFRNGKV VFADAIVHCT GYKYHFPFLK TSGYVTVEDN
301: RVGPLYKHVF PPALAPGISF IGLPFMGLQF FMFEIQSKWV ASVLSGRVKL PAEDKMMEEA VAFYSKLEDL GIPKRYTHFL TDPRGNPMLG TFKPEDAVVI
401: SQSDYFNWIA KQCGCTSIER WRERLYNVAI KKVFFGGDSY RDRWDDDQLI EEVYREFAKL KPNQDCSS

Arabidopsis Description

Flavin-containing monooxygenase FMO GS-OX-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.