Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G18800.2 | Thale cress | cytosol | 87.96 | 89.62 |
| KRH76302 | Soybean | cytosol | 76.85 | 78.3 |
| KRH65238 | Soybean | cytosol | 75.93 | 77.36 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 75.0 | 76.42 |
| Solyc08g080240.2.1 | Tomato | cytosol | 71.3 | 73.33 |
| PGSC0003DMT400058536 | Potato | cytosol | 71.3 | 72.64 |
| GSMUA_Achr6P08740_001 | Banana | cytosol | 71.3 | 71.96 |
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 70.37 | 71.03 |
| TraesCS4D01G193300.1 | Wheat | unclear | 71.3 | 70.0 |
| OQU92761 | Sorghum | cytosol, plastid | 71.3 | 70.0 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 71.3 | 70.0 |
| PGSC0003DMT400032530 | Potato | cytosol | 43.52 | 68.12 |
| Os03t0295500-01 | Rice | mitochondrion | 68.52 | 67.27 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 69.44 | 64.66 |
| Zm00001d047720_P003 | Maize | cytosol | 69.44 | 64.66 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 38.89 | 61.76 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 71.3 | 48.12 |
Protein Annotations
| MapMan:2.4.1.4.1.4 | EntrezGene:819805 | UniProt:A0A178VNM9 | ProteinID:AAF08582.1 | ProteinID:AEE74371.1 | ProteinID:AEE74373.1 |
| ArrayExpress:AT3G06310 | EnsemblPlantsGene:AT3G06310 | RefSeq:AT3G06310 | TAIR:AT3G06310 | RefSeq:AT3G06310-TAIR-G | EnsemblPlants:AT3G06310.1 |
| TAIR:AT3G06310.1 | EMBL:AY087020 | EMBL:AY093230 | EMBL:AY128825 | Unigene:At.40542 | InterPro:CHCH |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005747 |
| GO:GO:0005758 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0055114 |
| GO:GO:0070469 | RefSeq:NP_001189824.1 | RefSeq:NP_566280.1 | ProteinID:OAP06673.1 | PFAM:PF06747 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51808 | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | UniProt:Q9SQT4 | UniParc:UPI00000A7F19 | : |
Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A [Source:UniProtKB/Swiss-Prot;Acc:Q9SQT4]
Coordinates
chr3:-:1912968..1914442
Molecular Weight (calculated)
12160.8 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.456
Length
108 amino acids
Sequence
(BLAST)
(BLAST)
001: MEANAAVDGT GNPIPTSAVL TASAKHIGIR CMPENMAFLK CKKNDPNPEK CLEKGRDVTR CVLGLLKDLH QRCPKEMDAY VGCMYYYTNE FELCRKEQEA
101: FEKVCPLK
101: FEKVCPLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.