Factsheet for TraesCS4D01G193300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G111800.1	Wheat	cytosol, plastid	100.0	100.0
OQU92761	Sorghum	cytosol, plastid	94.55	94.55
Os03t0295500-01	Rice	mitochondrion	91.82	91.82
Zm00001d028773_P002	Maize	cytosol, plastid	94.55	89.66
Zm00001d047720_P003	Maize	cytosol	92.73	87.93
GSMUA_Achr6P08740_001	Banana	cytosol	80.0	82.24
GSMUA_Achr3P17940_001	Banana	mitochondrion	77.27	79.44
VIT_05s0020g02150.t01	Wine grape	cytosol	72.73	75.47
AT5G18800.2	Thale cress	cytosol	70.91	73.58
CDY47183	Canola	cytosol	70.91	73.58
CDY02602	Canola	cytosol	70.91	73.58
CDX92580	Canola	cytosol	70.91	73.58
CDX88910	Canola	cytosol	70.91	73.58
CDX70852	Canola	cytosol	70.91	73.58
Bra023693.1-P	Field mustard	cytosol	70.91	73.58
Bra002186.1-P	Field mustard	cytosol	70.91	73.58
CDY13921	Canola	cytosol	70.0	72.64
PGSC0003DMT400058536	Potato	cytosol	70.0	72.64
Solyc08g080240.2.1	Tomato	cytosol	69.09	72.38
AT3G06310.1	Thale cress	cytosol	70.0	71.3
KRH76302	Soybean	cytosol	68.18	70.75
GSMUA_Achr7P18280_001	Banana	cytosol	43.64	70.59
KRH65238	Soybean	cytosol	67.27	69.81
HORVU4Hr1G055850.1	Barley	cytosol	100.0	68.75
PGSC0003DMT400032530	Potato	cytosol	42.73	68.12
Bra006481.1-P	Field mustard	mitochondrion	71.82	58.96

Protein Annotations

EnsemblPlants:TraesCS4D01G193300.1	EnsemblPlantsGene:TraesCS4D01G193300	InterPro:CHCH	PANTHER:PTHR13344	PANTHER:PTHR13344:SF2	PFAM:PF06747
PFscan:PS51808	MapMan:2.4.1.4.1.4	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:336537562..336542637

Molecular Weight (calculated)

12359.8 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.510

Length

110 amino acids

Sequence
(BLAST)

001: MSASSTPVDA SGEPIPTSSV LMAASKHIAV RCRPENVAFL NCKKKDPNPE KCLEKGRQVT RCVFNLLKEL HQKCPKEMDA YAGCMYYYTN EFDFCRKEQE
101: AFEGACPISE

Best Arabidopsis Sequence Match ( AT5G18800.1 )
(BLAST)

001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.