Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002186.1-P | Field mustard | cytosol | 79.1 | 100.0 |
| Bra023693.1-P | Field mustard | cytosol | 79.1 | 100.0 |
| CDX88910 | Canola | cytosol | 79.1 | 100.0 |
| CDX92580 | Canola | cytosol | 79.1 | 100.0 |
| AT5G18800.2 | Thale cress | cytosol | 78.36 | 99.06 |
| KRH76302 | Soybean | cytosol | 65.67 | 83.02 |
| KRH65238 | Soybean | cytosol | 65.67 | 83.02 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 63.43 | 80.19 |
| GSMUA_Achr6P08740_001 | Banana | cytosol | 61.19 | 76.64 |
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 60.45 | 75.7 |
| Solyc08g080240.2.1 | Tomato | cytosol | 58.21 | 74.29 |
| PGSC0003DMT400058536 | Potato | cytosol | 58.21 | 73.58 |
| OQU92761 | Sorghum | cytosol, plastid | 58.96 | 71.82 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 58.96 | 71.82 |
| TraesCS4D01G193300.1 | Wheat | unclear | 58.96 | 71.82 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 35.07 | 69.12 |
| Os03t0295500-01 | Rice | mitochondrion | 55.97 | 68.18 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 58.21 | 67.24 |
| Zm00001d047720_P003 | Maize | cytosol | 58.21 | 67.24 |
| PGSC0003DMT400032530 | Potato | cytosol | 33.58 | 65.22 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 58.96 | 49.38 |
Protein Annotations
| EnsemblPlants:Bra006481.1 | EnsemblPlants:Bra006481.1-P | EnsemblPlantsGene:Bra006481 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:CHCH | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | PFAM:PF06747 |
| PFscan:PS51808 | UniParc:UPI000253FED4 | UniProt:M4CQJ2 | MapMan:2.4.1.4.1.4 | : | : |
Description
AT5G18800 (E=2e-060) | NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein
Coordinates
chrA03:+:3711359..3712721
Molecular Weight (calculated)
15110.4 Da
IEP (calculated)
8.572
GRAVY (calculated)
-0.496
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGDEKAVI RRLRGIGSEK KGFRIFRAMS SAVDATGNPI PTSAVLTASA KHIGLRCMPE NVAFLKCKKN DPNPEKCLDK GRDVTRCVLG LLKDLHQKCQ
101: KEMDDYVGCM YYYTNEFDLC RKEQEAFEKV CPLK
101: KEMDDYVGCM YYYTNEFDLC RKEQEAFEKV CPLK
001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK
101: KVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.