Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g080240.2.1 | Tomato | cytosol | 95.28 | 96.19 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 74.53 | 74.53 |
| AT5G18800.2 | Thale cress | cytosol | 73.58 | 73.58 |
| Bra002186.1-P | Field mustard | cytosol | 73.58 | 73.58 |
| Bra023693.1-P | Field mustard | cytosol | 73.58 | 73.58 |
| CDX70852 | Canola | cytosol | 73.58 | 73.58 |
| CDX88910 | Canola | cytosol | 73.58 | 73.58 |
| CDX92580 | Canola | cytosol | 73.58 | 73.58 |
| CDY02602 | Canola | cytosol | 73.58 | 73.58 |
| CDY47183 | Canola | cytosol | 73.58 | 73.58 |
| KRH76302 | Soybean | cytosol | 72.64 | 72.64 |
| GSMUA_Achr6P08740_001 | Banana | cytosol | 72.64 | 71.96 |
| CDY13921 | Canola | cytosol | 71.7 | 71.7 |
| KRH65238 | Soybean | cytosol | 71.7 | 71.7 |
| AT3G06310.1 | Thale cress | cytosol | 72.64 | 71.3 |
| PGSC0003DMT400032530 | Potato | cytosol | 46.23 | 71.01 |
| OQU92761 | Sorghum | cytosol, plastid | 73.58 | 70.91 |
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 70.75 | 70.09 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 72.64 | 70.0 |
| TraesCS4D01G193300.1 | Wheat | unclear | 72.64 | 70.0 |
| Os03t0295500-01 | Rice | mitochondrion | 71.7 | 69.09 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 72.64 | 66.38 |
| Zm00001d047720_P003 | Maize | cytosol | 71.7 | 65.52 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 41.51 | 64.71 |
| Bra006481.1-P | Field mustard | mitochondrion | 73.58 | 58.21 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 72.64 | 48.12 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400058536 | EnsemblPlantsGene:PGSC0003DMG400022739 | EntrezGene:102604331 | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | PFscan:PS51808 |
| PGSC:PGSC0003DMG400022739 | RefSeq:XP_006358861.1 | UniParc:UPI000294ECC7 | UniProt:M1C2U2 | MapMan:2.4.1.4.1.4 | : |
Description
NADH-ubiquinone oxidoreductase 19 kDa subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400022739]
Coordinates
chr8:+:53928988..53932319
Molecular Weight (calculated)
11976.4 Da
IEP (calculated)
7.657
GRAVY (calculated)
-0.589
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSAVDAVG NPIPTSAVLM SASKHIDIRC RSENVAYLKC KKDDPNPEKC LQKGQQVTRC VLSLLKDLHQ KCNKEMDAYA GCMYYNTNEF EMCRSEQKDF
101: EKACPY
101: EKACPY
001: MEANAAVDGT GNPIPTSAVL TASAKHIGIR CMPENMAFLK CKKNDPNPEK CLEKGRDVTR CVLGLLKDLH QRCPKEMDAY VGCMYYYTNE FELCRKEQEA
101: FEKVCPLK
101: FEKVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A [Source:UniProtKB/Swiss-Prot;Acc:Q9SQT4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.