Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08740_001 | Banana | cytosol | 89.72 | 89.72 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 53.27 | 83.82 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 79.44 | 77.27 |
| TraesCS4D01G193300.1 | Wheat | unclear | 79.44 | 77.27 |
| AT5G18800.2 | Thale cress | cytosol | 75.7 | 76.42 |
| CDY47183 | Canola | cytosol | 75.7 | 76.42 |
| CDY02602 | Canola | cytosol | 75.7 | 76.42 |
| CDX92580 | Canola | cytosol | 75.7 | 76.42 |
| CDX88910 | Canola | cytosol | 75.7 | 76.42 |
| CDX70852 | Canola | cytosol | 75.7 | 76.42 |
| Bra023693.1-P | Field mustard | cytosol | 75.7 | 76.42 |
| Bra002186.1-P | Field mustard | cytosol | 75.7 | 76.42 |
| OQU92761 | Sorghum | cytosol, plastid | 77.57 | 75.45 |
| CDY13921 | Canola | cytosol | 73.83 | 74.53 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 73.83 | 74.53 |
| KRH76302 | Soybean | cytosol | 71.96 | 72.64 |
| Os03t0295500-01 | Rice | mitochondrion | 73.83 | 71.82 |
| KRH65238 | Soybean | cytosol | 71.03 | 71.7 |
| Zm00001d047720_P003 | Maize | cytosol | 77.57 | 71.55 |
| Solyc08g080240.2.1 | Tomato | cytosol | 70.09 | 71.43 |
| PGSC0003DMT400058536 | Potato | cytosol | 70.09 | 70.75 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 76.64 | 70.69 |
| AT3G06310.1 | Thale cress | cytosol | 71.03 | 70.37 |
| PGSC0003DMT400032530 | Potato | cytosol | 39.25 | 60.87 |
| Bra006481.1-P | Field mustard | mitochondrion | 75.7 | 60.45 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 79.44 | 53.12 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P17940_001 | EnsemblPlants:GSMUA_Achr3T17940_001 | EnsemblPlantsGene:GSMUA_Achr3G17940_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:CHCH | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | PFAM:PF06747 |
| PFscan:PS51808 | UniParc:UPI00029526B8 | UniProt:M0SFL0 | MapMan:2.4.1.4.1.4 | : | : |
Description
Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17940_001]
Coordinates
chr3:+:19400951..19404240
Molecular Weight (calculated)
11947.5 Da
IEP (calculated)
8.279
GRAVY (calculated)
-0.465
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTVDAAGE PIPTSAVLMA AAKHITQRCR AENVAFIKCK KKDANPEKCL DKGRQVTSCV LNLLKELHQK CPKEMDAYAG CMNYYTNEFD LCRKEQEAFE
101: KASLLSK
101: KASLLSK
001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK
101: KVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.