Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76302 | Soybean | cytosol | 82.08 | 82.08 |
| KRH65238 | Soybean | cytosol | 81.13 | 81.13 |
| AT5G18800.2 | Thale cress | cytosol | 80.19 | 80.19 |
| Bra002186.1-P | Field mustard | cytosol | 80.19 | 80.19 |
| Bra023693.1-P | Field mustard | cytosol | 80.19 | 80.19 |
| CDX70852 | Canola | cytosol | 80.19 | 80.19 |
| CDX88910 | Canola | cytosol | 80.19 | 80.19 |
| CDX92580 | Canola | cytosol | 80.19 | 80.19 |
| CDY02602 | Canola | cytosol | 80.19 | 80.19 |
| CDY47183 | Canola | cytosol | 80.19 | 80.19 |
| CDY13921 | Canola | cytosol | 79.25 | 79.25 |
| Solyc08g080240.2.1 | Tomato | cytosol | 75.47 | 76.19 |
| GSMUA_Achr6P08740_001 | Banana | cytosol | 76.42 | 75.7 |
| AT3G06310.1 | Thale cress | cytosol | 76.42 | 75.0 |
| PGSC0003DMT400058536 | Potato | cytosol | 74.53 | 74.53 |
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 74.53 | 73.83 |
| TraesCS4D01G193300.1 | Wheat | unclear | 75.47 | 72.73 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 75.47 | 72.73 |
| PGSC0003DMT400032530 | Potato | cytosol | 47.17 | 72.46 |
| OQU92761 | Sorghum | cytosol, plastid | 74.53 | 71.82 |
| Os03t0295500-01 | Rice | mitochondrion | 74.53 | 71.82 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 73.58 | 67.24 |
| Zm00001d047720_P003 | Maize | cytosol | 72.64 | 66.38 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 42.45 | 66.18 |
| Bra006481.1-P | Field mustard | mitochondrion | 80.19 | 63.43 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 75.47 | 50.0 |
Protein Annotations
| EntrezGene:100266511 | wikigene:100266511 | MapMan:2.4.1.4.1.4 | ProteinID:CBI26136 | ProteinID:CBI26136.3 | InterPro:CHCH |
| UniProt:D7T6L5 | EMBL:FN595749 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005747 | GO:GO:0016020 | EntrezGene:LOC100266511 | wikigene:LOC100266511 | PFAM:PF06747 |
| PFscan:PS51808 | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | TIGR:TC52926 | UniParc:UPI00019832F3 | ArrayExpress:VIT_05s0020g02150 |
| EnsemblPlantsGene:VIT_05s0020g02150 | EnsemblPlants:VIT_05s0020g02150.t01 | unigene:Vvi.8966 | RefSeq:XP_002278102 | RefSeq:XP_002278102.1 | RefSeq:XP_002278120 |
| RefSeq:XP_002278120.1 | RefSeq:XP_010649810.1 | RefSeq:XP_010649811.1 | RefSeq:XP_019075578.1 | : | : |
Description
No Description!
Coordinates
chr5:+:3870646..3884284
Molecular Weight (calculated)
11964.4 Da
IEP (calculated)
7.311
GRAVY (calculated)
-0.542
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTVDAGGH PIPTSAVLMA SSKHIGSRCF SENVAFLKCK KQDPNPEKCL DKGREVTRCV FGLLKDLHQR CTKEMDAYAG CMYYHTNEFD LCRKEQQEFE
101: KACPLE
101: KACPLE
001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK
101: KVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.