Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 89.72 | 89.72 |
| GSMUA_Achr7P18280_001 | Banana | cytosol | 55.14 | 86.76 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 82.24 | 80.0 |
| TraesCS4D01G193300.1 | Wheat | unclear | 82.24 | 80.0 |
| OQU92761 | Sorghum | cytosol, plastid | 80.37 | 78.18 |
| CDY02602 | Canola | cytosol | 76.64 | 77.36 |
| CDY47183 | Canola | cytosol | 76.64 | 77.36 |
| CDX92580 | Canola | cytosol | 76.64 | 77.36 |
| CDX88910 | Canola | cytosol | 76.64 | 77.36 |
| CDX70852 | Canola | cytosol | 76.64 | 77.36 |
| Bra023693.1-P | Field mustard | cytosol | 76.64 | 77.36 |
| Bra002186.1-P | Field mustard | cytosol | 76.64 | 77.36 |
| AT5G18800.2 | Thale cress | cytosol | 76.64 | 77.36 |
| CDY13921 | Canola | cytosol | 75.7 | 76.42 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 75.7 | 76.42 |
| Os03t0295500-01 | Rice | mitochondrion | 77.57 | 75.45 |
| Zm00001d047720_P003 | Maize | cytosol | 80.37 | 74.14 |
| Solyc08g080240.2.1 | Tomato | cytosol | 71.96 | 73.33 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 79.44 | 73.28 |
| PGSC0003DMT400058536 | Potato | cytosol | 71.96 | 72.64 |
| KRH76302 | Soybean | cytosol | 71.03 | 71.7 |
| AT3G06310.1 | Thale cress | cytosol | 71.96 | 71.3 |
| KRH65238 | Soybean | cytosol | 70.09 | 70.75 |
| PGSC0003DMT400032530 | Potato | cytosol | 42.06 | 65.22 |
| Bra006481.1-P | Field mustard | mitochondrion | 76.64 | 61.19 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 82.24 | 55.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P08740_001 | EnsemblPlants:GSMUA_Achr6T08740_001 | EnsemblPlantsGene:GSMUA_Achr6G08740_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | InterPro:CHCH | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | PFAM:PF06747 |
| PFscan:PS51808 | SEG:seg | UniParc:UPI0002952C0D | UniProt:M0T5C3 | MapMan:2.4.1.4.1.4 | : |
Description
Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08740_001]
Coordinates
chr6:-:5804204..5809547
Molecular Weight (calculated)
11892.3 Da
IEP (calculated)
7.147
GRAVY (calculated)
-0.406
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTIDAAGE PIPTSAVLMA AAKHIAARCR AENVAFIKCK KKDPNPEKCL DKGRQVTSCV LNLLKELHQK CPNEMDAYAG CMYYYTNEFD LCRKEQEAFE
101: KACPVSE
101: KACPVSE
001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK
101: KVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.