Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P08740_001 | Banana | cytosol | 86.76 | 55.14 |
| GSMUA_Achr3P17940_001 | Banana | mitochondrion | 83.82 | 53.27 |
| AT5G18800.2 | Thale cress | cytosol | 69.12 | 44.34 |
| CDY47183 | Canola | cytosol | 69.12 | 44.34 |
| CDY02602 | Canola | cytosol | 69.12 | 44.34 |
| CDX92580 | Canola | cytosol | 69.12 | 44.34 |
| CDX88910 | Canola | cytosol | 69.12 | 44.34 |
| CDX70852 | Canola | cytosol | 69.12 | 44.34 |
| Bra023693.1-P | Field mustard | cytosol | 69.12 | 44.34 |
| Bra002186.1-P | Field mustard | cytosol | 69.12 | 44.34 |
| TraesCS4D01G193300.1 | Wheat | unclear | 70.59 | 43.64 |
| TraesCS4A01G111800.1 | Wheat | cytosol, plastid | 70.59 | 43.64 |
| OQU92761 | Sorghum | cytosol, plastid | 70.59 | 43.64 |
| CDY13921 | Canola | cytosol | 67.65 | 43.4 |
| Solyc08g080240.2.1 | Tomato | cytosol | 66.18 | 42.86 |
| VIT_05s0020g02150.t01 | Wine grape | cytosol | 66.18 | 42.45 |
| Zm00001d047720_P003 | Maize | cytosol | 72.06 | 42.24 |
| PGSC0003DMT400058536 | Potato | cytosol | 64.71 | 41.51 |
| KRH76302 | Soybean | cytosol | 64.71 | 41.51 |
| KRH65238 | Soybean | cytosol | 63.24 | 40.57 |
| Zm00001d028773_P002 | Maize | cytosol, plastid | 69.12 | 40.52 |
| Os03t0295500-01 | Rice | mitochondrion | 64.71 | 40.0 |
| AT3G06310.1 | Thale cress | cytosol | 61.76 | 38.89 |
| Bra006481.1-P | Field mustard | mitochondrion | 69.12 | 35.07 |
| HORVU4Hr1G055850.1 | Barley | cytosol | 70.59 | 30.0 |
| PGSC0003DMT400032530 | Potato | cytosol | 26.47 | 26.09 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P18280_001 | EnsemblPlants:GSMUA_Achr7T18280_001 | EnsemblPlantsGene:GSMUA_Achr7G18280_001 | PANTHER:PTHR13344 | PANTHER:PTHR13344:SF2 | UniParc:UPI000295F6F6 |
| UniProt:M0TIL5 | MapMan:2.4.1.4.1.4 | : | : | : | : |
Description
CHCH domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G18280_001]
Coordinates
chr7:+:21045654..21047765
Molecular Weight (calculated)
7188.9 Da
IEP (calculated)
8.350
GRAVY (calculated)
0.087
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGSVDAAGE PIPTSAVLMA AAKHIATGCR AVNVAFIKCE KKDPNLEKCL DKGRHVTSCV LNVLKELH
001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK
101: KVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.