CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G193300.1	Wheat	unclear	94.55	94.55
TraesCS4A01G111800.1	Wheat	cytosol, plastid	94.55	94.55
Zm00001d028773_P002	Maize	cytosol, plastid	98.18	93.1
Os03t0295500-01	Rice	mitochondrion	91.82	91.82
Zm00001d047720_P003	Maize	cytosol	96.36	91.38
GSMUA_Achr6P08740_001	Banana	cytosol	78.18	80.37
GSMUA_Achr3P17940_001	Banana	mitochondrion	75.45	77.57
VIT_05s0020g02150.t01	Wine grape	cytosol	71.82	74.53
AT5G18800.2	Thale cress	cytosol	70.91	73.58
PGSC0003DMT400058536	Potato	cytosol	70.91	73.58
KRH76302	Soybean	cytosol	70.91	73.58
CDY47183	Canola	cytosol	70.91	73.58
CDY02602	Canola	cytosol	70.91	73.58
CDX92580	Canola	cytosol	70.91	73.58
CDX88910	Canola	cytosol	70.91	73.58
CDX70852	Canola	cytosol	70.91	73.58
Bra023693.1-P	Field mustard	cytosol	70.91	73.58
Bra002186.1-P	Field mustard	cytosol	70.91	73.58
Solyc08g080240.2.1	Tomato	cytosol	70.0	73.33
CDY13921	Canola	cytosol	69.09	71.7
KRH65238	Soybean	cytosol	69.09	71.7
AT3G06310.1	Thale cress	cytosol	70.0	71.3
PGSC0003DMT400032530	Potato	cytosol	44.55	71.01
GSMUA_Achr7P18280_001	Banana	cytosol	43.64	70.59
HORVU4Hr1G055850.1	Barley	cytosol	94.55	65.0
Bra006481.1-P	Field mustard	mitochondrion	71.82	58.96

Protein Annotations

EnsemblPlants:OQU92761	EnsemblPlantsGene:SORBI_3001G404800	EntrezGene:8084028	InterPro:CHCH	PANTHER:PTHR13344	PANTHER:PTHR13344:SF2
PFAM:PF06747	PFscan:PS51808	ProteinID:OQU92761	ProteinID:OQU92761.1	RefSeq:XP_002468026.1	UniParc:UPI0001A82FD8
UniProt:A0A1Z5SA07	MapMan:2.4.1.4.1.4	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:68947634..68951155

Molecular Weight (calculated)

12397.8 Da

IEP (calculated)

6.480

GRAVY (calculated)

-0.530

Length

110 amino acids

Sequence
(BLAST)

001: MSASSAPVDA SGEPIPTSSV LMAASKHIAV RCRPENVAFL NCKKKDPNPE KCLEKGRQVT RCVLSLLKEL HQKCPKEMDE YAGCMYYYTN EFDFCRKEQQ
101: AFEEACPISE

Best Arabidopsis Sequence Match ( AT5G18800.1 )
(BLAST)

001: MSSAVDATGN PIPTSAVLTA SAKHIGMRCM PENVAFLKCK KNDPNPEKCL DKGRDVTRCV LGLLKDLHQK CQKEMDDYVG CMYYYTNEFD LCRKEQEAFE
101: KVCPLK

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.