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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 2
  • plastid 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
 mitochondrion: 19010998
mitochondrion: 23027867
msms PMID: 23027867 doi
G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.
msms PMID: 19010998 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G193300.1 Wheat unclear 91.82 91.82
TraesCS4A01G111800.1 Wheat cytosol, plastid 91.82 91.82
OQU92761 Sorghum cytosol, plastid 91.82 91.82
Zm00001d028773_P002 Maize cytosol, plastid 90.0 85.34
Zm00001d047720_P003 Maize cytosol 88.18 83.62
GSMUA_Achr6P08740_001 Banana cytosol 75.45 77.57
VIT_05s0020g02150.t01 Wine grape cytosol 71.82 74.53
GSMUA_Achr3P17940_001 Banana mitochondrion 71.82 73.83
PGSC0003DMT400058536 Potato cytosol 69.09 71.7
Solyc08g080240.2.1 Tomato cytosol 68.18 71.43
AT5G18800.2 Thale cress cytosol 67.27 69.81
CDY47183 Canola cytosol 67.27 69.81
CDY02602 Canola cytosol 67.27 69.81
CDX92580 Canola cytosol 67.27 69.81
CDX88910 Canola cytosol 67.27 69.81
CDX70852 Canola cytosol 67.27 69.81
Bra023693.1-P Field mustard cytosol 67.27 69.81
Bra002186.1-P Field mustard cytosol 67.27 69.81
CDY13921 Canola cytosol 66.36 68.87
KRH76302 Soybean cytosol 66.36 68.87
AT3G06310.1 Thale cress cytosol 67.27 68.52
KRH65238 Soybean cytosol 65.45 67.92
PGSC0003DMT400032530 Potato cytosol 41.82 66.67
GSMUA_Achr7P18280_001 Banana cytosol 40.0 64.71
HORVU4Hr1G055850.1 Barley cytosol 91.82 63.12
Bra006481.1-P Field mustard mitochondrion 68.18 55.97
Protein Annotations
MapMan:2.4.1.4.1.4EntrezGene:4332532ProteinID:ABF95433.1EMBL:AK240869ProteinID:BAF11738.2ProteinID:BAS83711.1
InterPro:CHCHProteinID:EEE58875.1GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005747GO:GO:0016020EnsemblPlantsGene:Os03g0295500EnsemblPlants:Os03t0295500-01PFAM:PF06747
PFscan:PS51808PANTHER:PTHR13344PANTHER:PTHR13344:SF2UniProt:Q10MU1UniParc:UPI0000DB4973RefSeq:XP_015631448.1
Description
CHCH domain containing protein. (Os03t0295500-01)
Coordinates
chr3:+:10325025..10330450
Molecular Weight (calculated)
12401.8 Da
IEP (calculated)
7.659
GRAVY (calculated)
-0.571
Length
110 amino acids
Sequence
(BLAST)
001: MSASSAPVDA SGDPIPTSSV LMAASKHIAV RCRPENVAFL NCKKKDPNPQ KCLEKGRQVK RCVFDLLKEL HQKCPKEMDA YAGCMYYYTN EFDFCRKEQQ
101: DFESACPVSE
Best Arabidopsis Sequence Match ( AT3G06310.1 )
(BLAST)
001: MEANAAVDGT GNPIPTSAVL TASAKHIGIR CMPENMAFLK CKKNDPNPEK CLEKGRDVTR CVLGLLKDLH QRCPKEMDAY VGCMYYYTNE FELCRKEQEA
101: FEKVCPLK
Arabidopsis Description
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-A [Source:UniProtKB/Swiss-Prot;Acc:Q9SQT4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.