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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • plastid 2
  • cytosol 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:golgi, plastid
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70445 Canola cytosol, peroxisome, plasma membrane 100.0 100.0
AT1G12600.1 Thale cress plasma membrane 86.29 86.53
Solyc08g080270.2.1 Tomato plasma membrane 73.14 80.5
VIT_02s0025g04490.t01 Wine grape plasma membrane 80.29 80.29
VIT_15s0048g01060.t01 Wine grape plasma membrane 79.43 79.89
Bra019340.1-P Field mustard plasma membrane 78.29 79.19
KRH40518 Soybean plasma membrane 80.57 78.77
KRH00671 Soybean endoplasmic reticulum 80.57 78.77
Os03t0118200-01 Rice golgi, peroxisome, plasma membrane 78.29 78.51
EER95630 Sorghum golgi, peroxisome, plasma membrane 76.86 76.2
Bra013669.1-P Field mustard plasma membrane 77.14 76.06
HORVU4Hr1G085820.1 Barley plasma membrane 73.43 75.81
GSMUA_Achr1P07960_001 Banana plasma membrane 74.0 75.51
PGSC0003DMT400058582 Potato plasma membrane 75.43 75.43
Solyc01g091840.2.1 Tomato endoplasmic reticulum, plasma membrane 75.43 74.16
TraesCS4B01G353800.1 Wheat plasma membrane 74.29 74.07
TraesCS4D01G347700.1 Wheat plasma membrane 73.43 73.85
TraesCS5A01G521500.1 Wheat plasma membrane 74.29 73.65
PGSC0003DMT400000002 Potato plasma membrane 57.71 72.92
Zm00001d048499_P001 Maize plasma membrane 74.29 70.65
KRG88431 Soybean plasma membrane 29.71 67.1
KRH65169 Soybean plasma membrane 42.57 48.53
KRH65174 Soybean plasma membrane 42.57 48.38
Bra019657.1-P Field mustard plasma membrane 20.86 22.05
Bra026835.1-P Field mustard plasma membrane 20.57 21.75
Bra002536.1-P Field mustard plasma membrane 20.57 20.99
Bra006695.1-P Field mustard cytosol, peroxisome, plasma membrane 18.86 20.5
Bra026579.1-P Field mustard peroxisome 20.86 20.17
Protein Annotations
EnsemblPlants:Bra016764.1EnsemblPlants:Bra016764.1-PEnsemblPlantsGene:Bra016764GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:UAAncoils:CoilPANTHER:PTHR10778
PANTHER:PTHR10778:SF29PFAM:PF08449SUPFAM:SSF103481TMHMM:TMhelixUniParc:UPI0002546040UniProt:M4DJT6
MapMan:24.2.1.1.5:::::
Description
AT1G12600 (E=3e-182) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, petal, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter-related (TAIR:AT4G23010.1); Has 943 Blast hits to 943 proteins in 196 species: Archae - 2; Bacteria - 55; Metazoa - 506; Fungi - 148; Plants - 112; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Coordinates
chrA08:+:19861990..19864340
Molecular Weight (calculated)
39014.6 Da
IEP (calculated)
9.312
GRAVY (calculated)
0.398
Length
350 amino acids
Sequence
(BLAST)
001: MKNSEEQMRS LFGISLSDKP RWQQFLICSS GFFFGYLVNG VCEEYVYNRL KFSYGWYFTF VQGLVYIVMI YLNGFTTKQM VNPWKTYVKL SAVLMGSHGL
101: TKGSLAYLNY PAQIMFKSTK VLPVMVMGAF IPGLRRKYPV HEYISAMLLV IGLILFTLAD AHTSPNFSII GVMMISGALV MDAFLGNLQE AIFTLNPDTT
201: QMEMLFCSTV VGLPFLVAPM ILTGELFRAW TSCAQHPYVY GVLVFEAMAT FVGQVSVLSL IALFGAATTA MITTARKAVT LLLSYLIFTK PLTEQHGTGL
301: LLISMGIILK MVPDPNPNQK PKHSSSGQKL RKLELVKSEK EGDEESRPLV
Best Arabidopsis Sequence Match ( AT1G12600.1 )
(BLAST)
001: MKTNSEEQMI KLFGIPLSDK PRWQQFLICS SGFFFGYLVN GICEEYVYNR LKFSYGWYFT FAQGLVYIAL IYMYGFRTKQ MVNPWKTYVK LSGVLMGSHG
101: LTKGSLAYLN YPAQIMFKST KVLPVMVMGA FIPGLRRKYP VHEYISAMLL VIGLILFTLA DAHTSPNFSI IGVMMISGAL IMDAFLGNLQ EAIFTMNPET
201: TQMEMLFCST VVGLPFLLAP MILTGELFTA WNSCAQHPYV YGVLVFEAMA TFIGQVSVLS LIALFGAATT AMITTARKAV TLLLSYLIFT KPLTEQHGTG
301: LLLIFMGIIL KMVPDPNPNP KSSGSGQTPG KLERVKFEKE DDEESRPLV
Arabidopsis Description
UTR4UDP-galactose/UDP-glucose transporter 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDX3]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.