CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40518	Soybean	plasma membrane	97.77	97.77
VIT_15s0048g01060.t01	Wine grape	plasma membrane	81.84	84.2
Bra019340.1-P	Field mustard	plasma membrane	79.05	81.79
CDY70445	Canola	cytosol, peroxisome, plasma membrane	78.77	80.57
Bra016764.1-P	Field mustard	cytosol, peroxisome, plasma membrane	78.77	80.57
GSMUA_Achr1P07960_001	Banana	plasma membrane	77.09	80.47
CDY58606	Canola	cytosol, peroxisome, plasma membrane	78.49	80.29
AT1G12600.1	Thale cress	plasma membrane	77.37	79.37
Os03t0118200-01	Rice	golgi, peroxisome, plasma membrane	76.82	78.8
CDX94144	Canola	plasma membrane	79.05	78.61
HORVU4Hr1G085820.1	Barley	plasma membrane	74.02	78.17
Bra013669.1-P	Field mustard	plasma membrane	76.82	77.46
EER95630	Sorghum	golgi, peroxisome, plasma membrane	76.26	77.34
TraesCS4B01G353800.1	Wheat	plasma membrane	74.58	76.07
TraesCS4D01G347700.1	Wheat	plasma membrane	73.74	75.86
TraesCS5A01G521500.1	Wheat	plasma membrane	74.58	75.64
KRG88431	Soybean	plasma membrane	32.4	74.84
Solyc01g091840.2.1	Tomato	endoplasmic reticulum, plasma membrane	73.18	73.6
Zm00001d048499_P001	Maize	plasma membrane	74.02	72.01
PGSC0003DMT400000002	Potato	plasma membrane	55.59	71.84
AT4G23010.3	Thale cress	plasma membrane	77.65	70.92
CDX98783	Canola	plasma membrane	72.35	69.07
CDY41258	Canola	plasma membrane	77.09	69.0
CDY10844	Canola	plasma membrane	76.54	63.57
KRH65169	Soybean	plasma membrane	45.81	53.42
KRH65174	Soybean	plasma membrane	45.25	52.6
KRH29863	Soybean	extracellular, mitochondrion, plasma membrane	13.41	22.02
KRH74812	Soybean	plasma membrane	19.27	20.91
KRH69315	Soybean	plasma membrane	18.99	20.61
KRH24858	Soybean	plasma membrane	20.11	20.4
KRG99133	Soybean	extracellular	6.98	19.68
KRH10309	Soybean	plasma membrane	18.99	19.37
KRH23010	Soybean	cytosol, peroxisome, plasma membrane	18.99	19.32
KRH29862	Soybean	cytosol	6.7	17.65

Protein Annotations

EntrezGene:100791781	MapMan:24.2.1.1.5	EMBL:ACUP02011467	EnsemblPlantsGene:GLYMA_18G228100	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030173	GO:GO:0030176
GO:GO:0046964	GO:GO:0055085	GO:GO:1902559	UniProt:I1N3L1	EnsemblPlants:KRH00671	ProteinID:KRH00671
ProteinID:KRH00671.1	PFAM:PF08449	PANTHER:PTHR10778	PANTHER:PTHR10778:SF19	SUPFAM:SSF103481	TMHMM:TMhelix
InterPro:UAA	UniParc:UPI000233E137	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:51724379..51728152

Molecular Weight (calculated)

39885.3 Da

IEP (calculated)

9.185

GRAVY (calculated)

0.398

Length

358 amino acids

Sequence
(BLAST)

001: MKNEEQARSL FGISLSDRPR WQQFLICSSG FFFGYLVNGI CEEYVYNRLH FSYGWYFTFV QGFVYLFLIY LQGFTSKQMV NPWKTYVKLS AVLMGSHGLT
101: KGSLAFLNYP AQIMFKSTKV LPVMIMGAFI PGLRRKYPLH EYISAILLVV GLILFTLADA QTSPNFSMIG VIMISGALVM DSFLGNLQEA IFTMNPETTQ
201: MEMLFCSTVV GLPFLIPPML FTGELFKAWT SCSQHPYVYG VLVFEAMATF IGQVSVLSLI AIFGAATTAM ITTARKAVTL LLSYLIFTKP LTEQHGSGLL
301: LIAMGITLKM LPDSKFTSTK TKRVLTSSAR NIGAKSTNDE ELGTLPNSGE NDERRPLV

Best Arabidopsis Sequence Match ( AT4G23010.1 )
(BLAST)

001: MKEEQTRSLF GISLSDKPTW QQFLICTSGF FFGYLVNGVC EEYVYNRLQF SFGWYFTFIQ GFVYLFLIYL QGFTTKHIVN PMRTYVKLSA VLMGSHGLTK
101: GSLAYLNYPA QIMFKSTKVL PVMIMGAFIP GLRRKYPVHE YISAFLLVLG LILFTLADAQ MSPNFSMIGI MMITGALIMD AFLGNLQEAI FTMNPETTQM
201: EMLFCSTVVG LPFLFVPMVL TGEVFRAWTA CAQHPYVYGV LVFEAMATFI GQVSVLSLIA LFGAATTALI TTARKGVTLL LSYLIFTKPL TEQHGSGLLL
301: IAMGIVLKMV PMDSKAPAKI PARPAVRIAG GDGDREEDEE RKSLV

Arabidopsis Description

UTR2UDP-galactose transporter 2 [Source:TAIR;Acc:AT4G23010]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.