Factsheet for Bra021473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34712	Canola	cytosol	99.72	99.72
Bra001037.1-P	Field mustard	cytosol	99.16	99.16
Bra039165.1-P	Field mustard	cytosol, extracellular, peroxisome	99.16	99.16
AT3G02230.1	Thale cress	cytosol	96.92	96.92
Bra008683.1-P	Field mustard	cytosol	94.12	94.12
Bra006315.1-P	Field mustard	cytosol	93.84	92.29
Bra023530.1-P	Field mustard	cytosol, extracellular, peroxisome	87.96	92.08
Bra001338.1-P	Field mustard	cytosol	82.63	81.04
Bra029728.1-P	Field mustard	cytosol	82.35	77.78
Bra000628.1-P	Field mustard	cytosol	75.07	74.65
Bra008616.1-P	Field mustard	cytosol	47.9	49.14
Bra023571.1-P	Field mustard	cytosol	12.89	43.4
Bra006359.1-P	Field mustard	cytosol	12.61	42.86

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	EnsemblPlantsGene:Bra021473	EnsemblPlants:Bra021473.1	EnsemblPlants:Bra021473.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016866	GO:GO:0030244	GO:GO:0071669	InterPro:IPR029044	UniProt:M4DY77	InterPro:Nucleotide-diphossugar_trans
PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP	InterPro:RGP_fam
SUPFAM:SSF53448	UniParc:UPI0001BA435D	:	:	:	:

Description

AT3G02230 (E=7e-212) RGP1, ATRGP1 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming)

Coordinates

chrA01:+:25083024..25084833

Molecular Weight (calculated)

40498.9 Da

IEP (calculated)

5.700

GRAVY (calculated)

-0.136

Length

357 amino acids

Sequence
(BLAST)

001: MVEPANTVGI PLNHTALLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLSKEAV TVQQCYIELS KMVKEKLSAI DPYFDKLADA MVTWIEAWDE LNPATKA

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.