Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27036 | Canola | extracellular, plasma membrane | 94.51 | 94.51 |
| Bra003092.1-P | Field mustard | extracellular | 74.51 | 71.43 |
| AT5G52990.1 | Thale cress | extracellular, plasma membrane | 72.94 | 68.38 |
| Bra019024.1-P | Field mustard | cytosol, plasma membrane, plastid | 49.02 | 50.0 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 42.35 | 39.56 |
| KRH64430 | Soybean | nucleus | 31.37 | 37.21 |
| KRH53507 | Soybean | nucleus | 32.16 | 35.04 |
| Solyc03g083070.1.1 | Tomato | cytosol | 36.08 | 34.98 |
| PGSC0003DMT400047728 | Potato | cytosol | 34.9 | 33.97 |
| Bra028003.1-P | Field mustard | nucleus | 22.75 | 21.89 |
| Bra000701.1-P | Field mustard | cytosol, extracellular, nucleus | 20.78 | 20.62 |
Protein Annotations
| EnsemblPlants:Bra022619.1 | EnsemblPlants:Bra022619.1-P | EnsemblPlantsGene:Bra022619 | Gene3D:3.30.450.50 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 | PFscan:PS50859 | SEG:seg | SUPFAM:SSF64356 |
| TMHMM:TMhelix | UniParc:UPI0002546DEE | UniProt:M4E1H1 | MapMan:22.7.6 | : | : |
Description
AT5G52990 (E=3e-102) | vesicle-associated membrane protein-related
Coordinates
chrA02:-:8485320..8486087
Molecular Weight (calculated)
28261.3 Da
IEP (calculated)
6.923
GRAVY (calculated)
-0.062
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNPSLLSY TCIAKGTVVL AEFASKEEPG IEDVALRCIE NTPPHHSTFS HTVRNKTYTF AIDDDSSLVY FAITDEAMEK PESFRILNRL RSAVDGSDAL
101: MDPSPRCLQA KMDPVFAEIL GGVDVDLELD MDLVVARESR NLSIDSTKGR RAALMPLLGK PLTALKKKKR LLHADDSAHV GVVDTASEKK VDLCGNGNGG
201: VLRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAVLF GIWLWVCQGF QCVNG
101: MDPSPRCLQA KMDPVFAEIL GGVDVDLELD MDLVVARESR NLSIDSTKGR RAALMPLLGK PLTALKKKKR LLHADDSAHV GVVDTASEKK VDLCGNGNGG
201: VLRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAVLF GIWLWVCQGF QCVNG
001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
Arabidopsis Description
PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.