CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022619.1-P	Field mustard	extracellular, plasma membrane	94.51	94.51
CDX96172	Canola	extracellular	85.1	81.89
CDY19649	Canola	extracellular	76.47	73.03
CDY50497	Canola	extracellular	74.12	71.05
AT5G52990.1	Thale cress	extracellular, plasma membrane	71.76	67.28
CDY68387	Canola	extracellular, plasma membrane, plastid	50.2	53.78
CDY29864	Canola	cytosol, plasma membrane, plastid	49.02	50.0
VIT_16s0098g01770.t01	Wine grape	cytosol	43.14	40.29
KRH64430	Soybean	nucleus	31.37	37.21
Solyc03g083070.1.1	Tomato	cytosol	36.86	35.74
KRH53507	Soybean	nucleus	32.16	35.04
PGSC0003DMT400047728	Potato	cytosol	35.69	34.73
CDX93763	Canola	cytosol, nucleus, plastid	22.75	21.97
CDY05086	Canola	cytosol, extracellular, nucleus	21.18	21.01
CDX90746	Canola	cytosol, extracellular, nucleus	20.39	20.23
CDY15276	Canola	nucleus	21.96	19.38
CDY70770	Canola	nucleus	21.96	19.38

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	GO:A0A078GP32	UniProt:A0A078GP32	EnsemblPlants:CDY27036	ProteinID:CDY27036
ProteinID:CDY27036.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00036848001	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFscan:PS50859
PANTHER:PTHR21136	PANTHER:PTHR21136:SF93	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0004EE4865	SEG:seg

Description

BnaA02g10560DBnaA02g10560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP32]

Coordinates

chrLK032199:-:103755..104691

Molecular Weight (calculated)

28168.1 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.058

Length

255 amino acids

Sequence
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFASKEEPG IEDVALRCIE NTPPHHSTFS HTVRNKTYTF AIDGDSSLVY FAITDEAMEK PESFRILNRL RSAVDGSDAL
101: MDPSPRCLQA EMDPVFAEIL GGVDVDLELD MDLVVARESR NLSIDSTKGR RAALMPLLGK PLTALKKKKR LLHADDSGDV GVVDTASEKK VDLCGNGNGG
201: VLRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAVLF GIWLWVCQGF QCVNG

Best Arabidopsis Sequence Match ( AT5G52990.1 )
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG

Arabidopsis Description

PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.