CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028003.1-P	Field mustard	nucleus	98.11	97.74
CDY15276	Canola	nucleus	94.32	86.16
CDY70770	Canola	nucleus	94.32	86.16
AT1G33475.1	Thale cress	cytosol	74.62	77.25
CDY05086	Canola	cytosol, extracellular, nucleus	57.95	59.53
CDX90746	Canola	cytosol, extracellular, nucleus	57.58	59.14
KRH56413	Soybean	cytosol	50.38	47.84
VIT_18s0089g00870.t01	Wine grape	nucleus	43.94	47.54
PGSC0003DMT400083261	Potato	cytosol	39.39	42.98
Solyc06g064430.1.1	Tomato	cytosol	38.26	41.91
KRH62495	Soybean	cytosol	46.97	41.06
GSMUA_Achr8P32370_001	Banana	cytosol	36.74	35.53
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	32.2	30.69
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	32.2	30.69
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	31.82	30.32
TraesCS7B01G221800.1	Wheat	nucleus	31.44	29.96
EES14394	Sorghum	mitochondrion	28.79	25.85
CDY68387	Canola	extracellular, plasma membrane, plastid	23.11	25.63
CDY50497	Canola	extracellular	24.62	24.44
CDY29864	Canola	cytosol, plasma membrane, plastid	23.11	24.4
CDY19649	Canola	extracellular	23.11	22.85
CDY27036	Canola	extracellular, plasma membrane	21.97	22.75
CDX96172	Canola	extracellular	22.35	22.26
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	31.06	21.03
Zm00001d000424_P001	Maize	plastid	30.3	20.05

Protein Annotations

EnsemblPlants:CDX93763	EnsemblPlantsGene:GSBRNA2T00156497001	Gene3D:3.30.450.50	GO:A0A078E2R0	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PANTHER:PTHR21136	PANTHER:PTHR21136:SF162	PFscan:PS50859	ProteinID:CDX93763	ProteinID:CDX93763.1
SEG:seg	SMART:SM01270	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0004EE181B	MapMan:22.7.6

Description

BnaA09g23630D

Coordinates

chrLK031877:+:523099..524214

Molecular Weight (calculated)

29405.0 Da

IEP (calculated)

9.088

GRAVY (calculated)

-0.402

Length

264 amino acids

Sequence
(BLAST)

001: MGSTVHYCCV SRGNQILYGY NNGGDHHRNE SLAALCLEKT PPFHKWYFET ISKRTFGFLI EEDGLVYFAI VDEVFKRSSV LEFLENLRDE LKKADEKNSR
101: GSFSGSISFN NVQDQLVRRL IASLERVAES TNHLTCLPLS SPSIDGAGQS DVAISTKAPL LGRSNKQEKK KKKGKDHVNT LRGVEVEEQR KSTDRGNVTE
201: CSNASSAAAA ATYVPRRDRS SGSQSFEKKW RRQVKIVLVI DAAICLTLLG VWLAICQGIQ CIRS

Best Arabidopsis Sequence Match ( AT1G33475.1 )
(BLAST)

001: MGSIQNTVHY CCVSRDNQIM YAYNNAGDHR NNESLAALCL EKTPPFHKWY FETRGKKTFG FLMKDDFVYF AIVDDVFKKS SVLDFLEKLR DELKEANKKN
101: SRGSFSGSIS FSNVQDQIVR RLIASLEFDH TCLPLSSPSI DGAEQSYASN SKAPLLGRSN KQDKKKGRDH AHSLRGIEIE EHRKSNDRGN VTECSNASSE
201: SATYVPRRGR SGGSQSIERK WRRQVKIVLA IDIAICLTLL GVWLAICHGI ECTRS

Arabidopsis Description

PHYL1.2Phytolongin Phyl1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.