CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70770	Canola	nucleus	100.0	100.0
CDX93763	Canola	cytosol, nucleus, plastid	86.16	94.32
AT1G33475.1	Thale cress	cytosol	67.82	76.86
CDY05086	Canola	cytosol, extracellular, nucleus	51.56	57.98
CDX90746	Canola	cytosol, extracellular, nucleus	51.21	57.59
KRH56413	Soybean	cytosol	44.64	46.4
VIT_18s0089g00870.t01	Wine grape	nucleus	38.75	45.9
PGSC0003DMT400083261	Potato	cytosol	35.64	42.56
Solyc06g064430.1.1	Tomato	cytosol	34.6	41.49
KRH62495	Soybean	cytosol	42.56	40.73
GSMUA_Achr8P32370_001	Banana	cytosol	33.56	35.53
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	29.07	30.32
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	28.72	29.96
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	28.72	29.96
TraesCS7B01G221800.1	Wheat	nucleus	28.37	29.6
CDY68387	Canola	extracellular, plasma membrane, plastid	21.45	26.05
EES14394	Sorghum	mitochondrion	26.3	25.85
CDY29864	Canola	cytosol, plasma membrane, plastid	21.11	24.4
CDY50497	Canola	extracellular	21.8	23.68
CDY27036	Canola	extracellular, plasma membrane	19.38	21.96
CDY19649	Canola	extracellular	20.07	21.72
CDX96172	Canola	extracellular	19.72	21.51
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	28.37	21.03
Zm00001d000424_P001	Maize	plastid	27.34	19.8

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	GO:A0A078FQ51	UniProt:A0A078FQ51	EnsemblPlants:CDY15276	ProteinID:CDY15276
ProteinID:CDY15276.1	ProteinID:CDY70770.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00085478001	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
PFscan:PS50859	PANTHER:PTHR21136	PANTHER:PTHR21136:SF162	SMART:SM01270	SUPFAM:SSF64356	TMHMM:TMhelix
UniParc:UPI0004EF0BFC	SEG:seg	:	:	:	:

Description

BnaC06g07620DBnaC06g07620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ51]

Coordinates

chrLK032053:-:20458..21882

Molecular Weight (calculated)

32323.8 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.285

Length

289 amino acids

Sequence
(BLAST)

001: MCSTVHYCCV SRGNQILYGY NNGGDHHRNE SLAALCLEKT PPFHKWYFET ISKRTFGFLI EEDGLVYFAI VDEVFKRSSV LEFLENLKDE LKKADKKNSR
101: GSFSGSISFN NVQDQLVRRL IASLERVAET NHLTCLPLSS PSIDGAEQSD VAISTKAPLL GRSNKQEKKK KGKDHVNTLR GVEVEEQRKS TDRGNVTESS
201: NASSAAAAAA TYVPRRDRSS GSQSIEKKWR RQVKIVLVID AAICLTLLGV WLAICQGIQC RLQLTYSAEL LIVYLLGKRL KFPPGFVYV

Best Arabidopsis Sequence Match ( AT1G33475.1 )
(BLAST)

001: MGSIQNTVHY CCVSRDNQIM YAYNNAGDHR NNESLAALCL EKTPPFHKWY FETRGKKTFG FLMKDDFVYF AIVDDVFKKS SVLDFLEKLR DELKEANKKN
101: SRGSFSGSIS FSNVQDQIVR RLIASLEFDH TCLPLSSPSI DGAEQSYASN SKAPLLGRSN KQDKKKGRDH AHSLRGIEIE EHRKSNDRGN VTECSNASSE
201: SATYVPRRGR SGGSQSIERK WRRQVKIVLA IDIAICLTLL GVWLAICHGI ECTRS

Arabidopsis Description

PHYL1.2Phytolongin Phyl1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.