Skip to main content
crop-pal logo
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 2
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27036 Canola extracellular, plasma membrane 81.89 85.1
CDY50497 Canola extracellular 75.09 74.81
CDY19649 Canola extracellular 73.96 73.41
AT5G52990.1 Thale cress extracellular, plasma membrane 70.57 68.75
CDY68387 Canola extracellular, plasma membrane, plastid 50.57 56.3
CDY29864 Canola cytosol, plasma membrane, plastid 49.06 52.0
VIT_16s0098g01770.t01 Wine grape cytosol 41.13 39.93
KRH64430 Soybean nucleus 30.19 37.21
KRH53507 Soybean nucleus 31.32 35.47
Solyc03g083070.1.1 Tomato cytosol 35.09 35.36
PGSC0003DMT400047728 Potato cytosol 33.96 34.35
CDX93763 Canola cytosol, nucleus, plastid 22.26 22.35
CDY05086 Canola cytosol, extracellular, nucleus 21.51 22.18
CDX90746 Canola cytosol, extracellular, nucleus 21.13 21.79
CDY15276 Canola nucleus 21.51 19.72
CDY70770 Canola nucleus 21.51 19.72
Protein Annotations
EnsemblPlants:CDX96172EnsemblPlantsGene:GSBRNA2T00102241001Gene3D:3.30.450.50GO:A0A078E4X0InterPro:IPR010908InterPro:Longin-like_dom_sf
InterPro:Longin_domPANTHER:PTHR21136PANTHER:PTHR21136:SF93PFscan:PS50859ProteinID:CDX96172ProteinID:CDX96172.1
SEG:segSUPFAM:SSF64356TMHMM:TMhelixUniParc:UPI0004EE705FMapMan:22.7.6:
Description
BnaC02g14790D
Coordinates
chrLK031893:+:261659..262917
Molecular Weight (calculated)
29248.4 Da
IEP (calculated)
6.924
GRAVY (calculated)
-0.109
Length
265 amino acids
Sequence
(BLAST)
001: MISNPSLLSY TCIAKGTVVL AEFASKEEPG IEDVALRCIE NTPPHHSMFS HTVRKKTYTF AIDDDSFVYF AITDEPMEKH ESFRILNRLR SAFEDLIRVG
101: GGSEALLDPS PRCLQAKMDP VFAEIVGGGG VDVDLELDMD LVVARESRNL SIDSTKGRRA ALIPLLGKPL KALKKKKRLL HADDSGEVGV VDGASEKKVD
201: LCGNGNGDGG VSRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAALF GIWLWVCQGF QCVNG
Best Arabidopsis Sequence Match ( AT5G52990.1 )
(BLAST)
001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
Arabidopsis Description
PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.