Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY27036 | Canola | extracellular, plasma membrane | 81.89 | 85.1 |
CDY50497 | Canola | extracellular | 75.09 | 74.81 |
CDY19649 | Canola | extracellular | 73.96 | 73.41 |
AT5G52990.1 | Thale cress | extracellular, plasma membrane | 70.57 | 68.75 |
CDY68387 | Canola | extracellular, plasma membrane, plastid | 50.57 | 56.3 |
CDY29864 | Canola | cytosol, plasma membrane, plastid | 49.06 | 52.0 |
VIT_16s0098g01770.t01 | Wine grape | cytosol | 41.13 | 39.93 |
KRH64430 | Soybean | nucleus | 30.19 | 37.21 |
KRH53507 | Soybean | nucleus | 31.32 | 35.47 |
Solyc03g083070.1.1 | Tomato | cytosol | 35.09 | 35.36 |
PGSC0003DMT400047728 | Potato | cytosol | 33.96 | 34.35 |
CDX93763 | Canola | cytosol, nucleus, plastid | 22.26 | 22.35 |
CDY05086 | Canola | cytosol, extracellular, nucleus | 21.51 | 22.18 |
CDX90746 | Canola | cytosol, extracellular, nucleus | 21.13 | 21.79 |
CDY15276 | Canola | nucleus | 21.51 | 19.72 |
CDY70770 | Canola | nucleus | 21.51 | 19.72 |
Protein Annotations
EnsemblPlants:CDX96172 | EnsemblPlantsGene:GSBRNA2T00102241001 | Gene3D:3.30.450.50 | GO:A0A078E4X0 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
InterPro:Longin_dom | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 | PFscan:PS50859 | ProteinID:CDX96172 | ProteinID:CDX96172.1 |
SEG:seg | SUPFAM:SSF64356 | TMHMM:TMhelix | UniParc:UPI0004EE705F | MapMan:22.7.6 | : |
Description
BnaC02g14790D
Coordinates
chrLK031893:+:261659..262917
Molecular Weight (calculated)
29248.4 Da
IEP (calculated)
6.924
GRAVY (calculated)
-0.109
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNPSLLSY TCIAKGTVVL AEFASKEEPG IEDVALRCIE NTPPHHSMFS HTVRKKTYTF AIDDDSFVYF AITDEPMEKH ESFRILNRLR SAFEDLIRVG
101: GGSEALLDPS PRCLQAKMDP VFAEIVGGGG VDVDLELDMD LVVARESRNL SIDSTKGRRA ALIPLLGKPL KALKKKKRLL HADDSGEVGV VDGASEKKVD
201: LCGNGNGDGG VSRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAALF GIWLWVCQGF QCVNG
101: GGSEALLDPS PRCLQAKMDP VFAEIVGGGG VDVDLELDMD LVVARESRNL SIDSTKGRRA ALIPLLGKPL KALKKKKRLL HADDSGEVGV VDGASEKKVD
201: LCGNGNGDGG VSRKELRNGL LTDHHKAKQM WKKHVWVVLM FDFCICAALF GIWLWVCQGF QCVNG
001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
Arabidopsis Description
PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.