Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022619.1-P | Field mustard | extracellular, plasma membrane | 68.38 | 72.94 |
| CDY19649 | Canola | extracellular | 70.59 | 71.91 |
| CDY27036 | Canola | extracellular, plasma membrane | 67.28 | 71.76 |
| CDX96172 | Canola | extracellular | 68.75 | 70.57 |
| Bra003092.1-P | Field mustard | extracellular | 67.28 | 68.8 |
| CDY50497 | Canola | extracellular | 66.91 | 68.42 |
| AT4G27840.1 | Thale cress | plasma membrane | 58.09 | 60.77 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 40.44 | 40.29 |
| KRH64430 | Soybean | nucleus | 30.51 | 38.6 |
| Solyc03g083070.1.1 | Tomato | cytosol | 35.29 | 36.5 |
| PGSC0003DMT400047728 | Potato | cytosol | 34.19 | 35.5 |
| KRH53507 | Soybean | nucleus | 30.15 | 35.04 |
| AT4G10170.1 | Thale cress | cytosol | 21.69 | 23.23 |
| AT1G33475.1 | Thale cress | cytosol | 21.32 | 22.75 |
Protein Annotations
| MapMan:22.7.6 | Gene3D:3.30.450.50 | EntrezGene:835378 | ProteinID:AED96287.1 | EMBL:AK227969 | ArrayExpress:AT5G52990 |
| EnsemblPlantsGene:AT5G52990 | RefSeq:AT5G52990 | TAIR:AT5G52990 | RefSeq:AT5G52990-TAIR-G | EnsemblPlants:AT5G52990.1 | TAIR:AT5G52990.1 |
| Unigene:At.29581 | ProteinID:BAA97139.1 | EMBL:BT004599 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | InterPro:Longin-like_dom_sf |
| RefSeq:NP_200111.1 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 | UniProt:Q9LVV3 | SUPFAM:SSF64356 | TMHMM:TMhelix |
| UniParc:UPI00000A0C7D | SEG:seg | : | : | : | : |
Description
PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
Coordinates
chr5:+:21483919..21485385
Molecular Weight (calculated)
30458.9 Da
IEP (calculated)
7.250
GRAVY (calculated)
-0.125
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.