CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53507	Soybean	nucleus	82.33	75.64
CDY68387	Canola	extracellular, plasma membrane, plastid	35.35	31.93
Bra022619.1-P	Field mustard	extracellular, plasma membrane	37.21	31.37
CDY27036	Canola	extracellular, plasma membrane	37.21	31.37
AT5G52990.1	Thale cress	extracellular, plasma membrane	38.6	30.51
CDY29864	Canola	cytosol, plasma membrane, plastid	35.35	30.4
Bra019024.1-P	Field mustard	cytosol, plasma membrane, plastid	35.35	30.4
CDX96172	Canola	extracellular	37.21	30.19
Solyc03g083070.1.1	Tomato	cytosol	36.74	30.04
PGSC0003DMT400047728	Potato	cytosol	36.28	29.77
VIT_16s0098g01770.t01	Wine grape	cytosol	37.67	29.67
CDY50497	Canola	extracellular	36.28	29.32
Bra003092.1-P	Field mustard	extracellular	35.81	28.95
CDY19649	Canola	extracellular	35.35	28.46
AT4G27840.1	Thale cress	plasma membrane	32.56	26.92
KRH56413	Soybean	cytosol	23.26	17.99
KRH62495	Soybean	cytosol	22.33	15.89

Protein Annotations

EntrezGene:100808430	MapMan:22.7.6	Gene3D:3.30.450.50	EMBL:ACUP02002765	EnsemblPlantsGene:GLYMA_04G235100	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
UniProt:I1JYQ9	EnsemblPlants:KRH64430	ProteinID:KRH64430	ProteinID:KRH64430.1	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF93	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0002339F1B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:50338901..50340680

Molecular Weight (calculated)

24608.6 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.308

Length

215 amino acids

Sequence
(BLAST)

001: MISNPELIHY ACIARSETIL GQHQSEKEPN MEALAAQCVA QTPPNHSLFS HTVNHRTYTF LIDPPFVFFS ISHHSLLKSQ TLPFLHRIRS SFRQTLPPTN
101: NHHFAPLSFQ SQFHTIFQNA LHDNNRSQQQ QQPSPPLNPP AQGLKKKKRP NDAPATLDVS DDAVSLKPQL HNHSNKAKHV WKKHVWVLLL LDLFVCAVLF
201: VIWLWVCSGF KCMAY

Best Arabidopsis Sequence Match ( AT5G52990.1 )
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG

Arabidopsis Description

PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.