Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29864 | Canola | cytosol, plasma membrane, plastid | 90.8 | 90.8 |
| CDY68387 | Canola | extracellular, plasma membrane, plastid | 78.4 | 82.35 |
| AT4G27840.1 | Thale cress | plasma membrane | 65.2 | 62.69 |
| Bra003092.1-P | Field mustard | extracellular | 52.8 | 49.62 |
| Bra022619.1-P | Field mustard | extracellular, plasma membrane | 50.0 | 49.02 |
| KRH64430 | Soybean | nucleus | 30.4 | 35.35 |
| Solyc03g083070.1.1 | Tomato | cytosol | 36.4 | 34.6 |
| PGSC0003DMT400047728 | Potato | cytosol | 36.0 | 34.35 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 36.8 | 33.7 |
| KRH53507 | Soybean | nucleus | 30.8 | 32.91 |
| Bra028003.1-P | Field mustard | nucleus | 24.4 | 23.02 |
| Bra000701.1-P | Field mustard | cytosol, extracellular, nucleus | 21.2 | 20.62 |
Protein Annotations
| EnsemblPlants:Bra019024.1 | EnsemblPlants:Bra019024.1-P | EnsemblPlantsGene:Bra019024 | Gene3D:3.30.450.50 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002540B43 |
| UniProt:M4DR81 | MapMan:22.7.6 | : | : | : | : |
Description
AT4G27840 (E=1e-094) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein-related (TAIR:AT5G52990.1); Has 165 Blast hits to 165 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA03:-:26697698..26698450
Molecular Weight (calculated)
28062.4 Da
IEP (calculated)
9.549
GRAVY (calculated)
-0.106
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNPRLMFY SCIARGTVIL AEFSSKDEPE IEALALRCIQ NVPSHHSMIS QTVRKRTYAS IIDGLFTYFA ILDEAVTKNE SLWLFTRLKS AMEALVPDRS
101: ALDNPTQHCL QSKLDPVFAE IAGGGNNNNK GLEPELGLVG SPREIKNLSL DSSKEQRALK PLLAKPLMVL KKNKKRVQTE AKMDVGGGVS VSNSRGLPRN
201: GLIHDHHHRQ KAKQIWKKHV WIVLMFDVCI CIVLFGIWLW VCQGFQCIQA
101: ALDNPTQHCL QSKLDPVFAE IAGGGNNNNK GLEPELGLVG SPREIKNLSL DSSKEQRALK PLLAKPLMVL KKNKKRVQTE AKMDVGGGVS VSNSRGLPRN
201: GLIHDHHHRQ KAKQIWKKHV WIVLMFDVCI CIVLFGIWLW VCQGFQCIQA
001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
Arabidopsis Description
PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.