Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019024.1-P | Field mustard | cytosol, plasma membrane, plastid | 90.8 | 90.8 |
| CDY68387 | Canola | extracellular, plasma membrane, plastid | 84.8 | 89.08 |
| AT4G27840.1 | Thale cress | plasma membrane | 62.0 | 59.62 |
| CDY50497 | Canola | extracellular | 53.6 | 50.38 |
| CDX96172 | Canola | extracellular | 52.0 | 49.06 |
| CDY27036 | Canola | extracellular, plasma membrane | 50.0 | 49.02 |
| CDY19649 | Canola | extracellular | 51.6 | 48.31 |
| KRH64430 | Soybean | nucleus | 30.4 | 35.35 |
| PGSC0003DMT400047728 | Potato | cytosol | 36.8 | 35.11 |
| Solyc03g083070.1.1 | Tomato | cytosol | 36.0 | 34.22 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 36.0 | 32.97 |
| KRH53507 | Soybean | nucleus | 30.8 | 32.91 |
| CDX93763 | Canola | cytosol, nucleus, plastid | 24.4 | 23.11 |
| CDY15276 | Canola | nucleus | 24.4 | 21.11 |
| CDY70770 | Canola | nucleus | 24.4 | 21.11 |
| CDY05086 | Canola | cytosol, extracellular, nucleus | 21.2 | 20.62 |
| CDX90746 | Canola | cytosol, extracellular, nucleus | 20.8 | 20.23 |
Protein Annotations
| EnsemblPlants:CDY29864 | EnsemblPlantsGene:GSBRNA2T00044309001 | Gene3D:3.30.450.50 | GO:A0A078GXL1 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Longin-like_dom_sf | PANTHER:PTHR21136 |
| PANTHER:PTHR21136:SF93 | ProteinID:CDY29864 | ProteinID:CDY29864.1 | SUPFAM:SSF64356 | TMHMM:TMhelix | UniParc:UPI0004EDB398 |
| UniProt:A0A078GXL1 | MapMan:22.7.6 | : | : | : | : |
Description
BnaA03g48850DBnaA03g48850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXL1]
Coordinates
chrLK032245:-:170707..171459
Molecular Weight (calculated)
28046.4 Da
IEP (calculated)
9.726
GRAVY (calculated)
-0.122
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MISNPRLMFY SCIARGTVIL AEFSSKDEPE IEALALRCIQ NVPSHHSMIS QTVRKRTYAS IIDGLFTYFA ILDEAVTKKE SLWLFTRLKS AMEALVPDRS
101: ALDNPTQHCL QSKLDPVFAE IAGGGNNNNK DLEPGLGLVG SPREIKNPSL DSSKEQRALK PLLAKPLMVL KKNKKRVQTE AKMDVAGGVS VSNSRGLPRN
201: GLIHDHHHRQ KAKQIWKKHV WVVLMFDVCI CIVLFGIWLW VCQGFQCIQA
101: ALDNPTQHCL QSKLDPVFAE IAGGGNNNNK DLEPGLGLVG SPREIKNPSL DSSKEQRALK PLLAKPLMVL KKNKKRVQTE AKMDVAGGVS VSNSRGLPRN
201: GLIHDHHHRQ KAKQIWKKHV WVVLMFDVCI CIVLFGIWLW VCQGFQCIQA
001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
Arabidopsis Description
PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.