Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc03g083070.1.1 | Tomato | cytosol | 91.98 | 91.64 |
VIT_16s0098g01770.t01 | Wine grape | cytosol | 47.33 | 45.42 |
CDY68387 | Canola | extracellular, plasma membrane, plastid | 35.5 | 39.08 |
CDY29864 | Canola | cytosol, plasma membrane, plastid | 35.11 | 36.8 |
KRH64430 | Soybean | nucleus | 29.77 | 36.28 |
Bra019024.1-P | Field mustard | cytosol, plasma membrane, plastid | 34.35 | 36.0 |
KRH53507 | Soybean | nucleus | 32.06 | 35.9 |
AT4G27840.1 | Thale cress | plasma membrane | 35.5 | 35.77 |
CDY27036 | Canola | extracellular, plasma membrane | 34.73 | 35.69 |
Bra003092.1-P | Field mustard | extracellular | 35.88 | 35.34 |
CDY50497 | Canola | extracellular | 35.5 | 34.96 |
Bra022619.1-P | Field mustard | extracellular, plasma membrane | 33.97 | 34.9 |
CDY19649 | Canola | extracellular | 35.5 | 34.83 |
AT5G52990.1 | Thale cress | extracellular, plasma membrane | 35.5 | 34.19 |
CDX96172 | Canola | extracellular | 34.35 | 33.96 |
PGSC0003DMT400083261 | Potato | cytosol | 27.86 | 30.17 |
Protein Annotations
EnsemblPlants:PGSC0003DMT400047728 | EnsemblPlantsGene:PGSC0003DMG400018551 | Gene3D:3.30.450.50 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Longin-like_dom_sf | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 |
PGSC:PGSC0003DMG400018551 | SEG:seg | SUPFAM:SSF64356 | TMHMM:TMhelix | UniParc:UPI0002955E29 | UniProt:M1BLC0 |
MapMan:22.7.6 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018551]
Coordinates
chr3:-:48215045..48216567
Molecular Weight (calculated)
29415.8 Da
IEP (calculated)
9.457
GRAVY (calculated)
-0.163
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPDPNLVYY SCVAKGTTIL AEINSKDANL GSLALKCLEK TPPLHTFFSH TIRNRTYMFL IENPYVFFAI FDEKIDKSDG LAFLKGVEGA FRGVIERSSG
101: KKRLDKLNSH CFQGELNPVF HQLLDSSIVD EGSNSPRSEL DHGRSASLDS VKGKKIGSMP LLADAASSLK LKKKRFFGHF KKRNDEMCEK RVDVSDDGIR
201: LSRDFSVVMQ KNGLIHGEGG HQKAKKVWKK QVWVVLSLDL IVCTILFIVW LCVCRGFKCI DA
101: KKRLDKLNSH CFQGELNPVF HQLLDSSIVD EGSNSPRSEL DHGRSASLDS VKGKKIGSMP LLADAASSLK LKKKRFFGHF KKRNDEMCEK RVDVSDDGIR
201: LSRDFSVVMQ KNGLIHGEGG HQKAKKVWKK QVWVVLSLDL IVCTILFIVW LCVCRGFKCI DA
001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
Arabidopsis Description
PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.