Factsheet for PGSC0003DMT400083261

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064430.1.1	Tomato	cytosol	91.32	91.7
KRH56413	Soybean	cytosol	53.31	46.4
VIT_18s0089g00870.t01	Wine grape	nucleus	45.45	45.08
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	45.45	42.8
CDX90746	Canola	cytosol, extracellular, nucleus	45.45	42.8
AT4G10170.1	Thale cress	cytosol	44.63	42.52
CDY05086	Canola	cytosol, extracellular, nucleus	45.04	42.41
KRH62495	Soybean	cytosol	51.65	41.39
Bra028003.1-P	Field mustard	nucleus	43.39	39.62
CDX93763	Canola	cytosol, nucleus, plastid	42.98	39.39
AT1G33475.1	Thale cress	cytosol	40.5	38.43
CDY15276	Canola	nucleus	42.56	35.64
CDY70770	Canola	nucleus	42.56	35.64
GSMUA_Achr8P32370_001	Banana	cytosol	36.36	32.23
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	33.88	29.6
TraesCS7B01G221800.1	Wheat	nucleus	33.47	29.24
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	33.47	29.24
PGSC0003DMT400047728	Potato	cytosol	30.17	27.86
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	28.51	24.91
EES14394	Sorghum	mitochondrion	29.34	24.15
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	33.06	20.51
Zm00001d000424_P001	Maize	plastid	32.64	19.8

Protein Annotations

EnsemblPlants:PGSC0003DMT400083261	EnsemblPlantsGene:PGSC0003DMG400033147	EntrezGene:102580778	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF88	PGSC:PGSC0003DMG400033147	RefSeq:XP_006356537.1	SEG:seg	SUPFAM:SSF64356	TMHMM:TMhelix
UniParc:UPI0002965660	UniProt:M1D6T2	MapMan:22.7.6	:	:	:

Description

VAMP [Source:PGSC_GENE;Acc:PGSC0003DMG400033147]

Coordinates

chr6:+:47796613..47798295

Molecular Weight (calculated)

27311.1 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.122

Length

242 amino acids

Sequence
(BLAST)

001: MGSVQNSVYY CSVSKGGQLI YAYNGGDHET ENLAALCLER VPPFHKWYFQ TMVKKTFGFL MEDEGYVYFA IVDEGLGNDK VLRFLEQLKD EFRKVAKKGS
101: CWTMSNLNSI CLQGELVPVI SPCNNATGKI VEGGDSTNAL LLGKPSRQEK KKRNDHVIAI RDAELEEDRN STEVVDTNDQ DTVVIPIMSQ KELCLVRNIT
201: SSQNFQKKWC RHVRVILAID VVVCLVLLVI WLVICEGTKC LH

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.