CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62495	Soybean	cytosol	92.81	85.43
VIT_18s0089g00870.t01	Wine grape	nucleus	52.88	60.25
AT4G10170.1	Thale cress	cytosol	51.08	55.91
PGSC0003DMT400083261	Potato	cytosol	46.4	53.31
CDX90746	Canola	cytosol, extracellular, nucleus	47.84	51.75
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	47.84	51.75
CDY05086	Canola	cytosol, extracellular, nucleus	47.48	51.36
Solyc06g064430.1.1	Tomato	cytosol	43.88	50.62
CDX93763	Canola	cytosol, nucleus, plastid	47.84	50.38
Bra028003.1-P	Field mustard	nucleus	47.48	49.81
AT1G33475.1	Thale cress	cytosol	43.53	47.45
CDY15276	Canola	nucleus	46.4	44.64
CDY70770	Canola	nucleus	46.4	44.64
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	36.33	36.46
TraesCS7B01G221800.1	Wheat	nucleus	35.97	36.1
GSMUA_Achr8P32370_001	Banana	cytosol	34.89	35.53
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	35.25	35.38
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	33.45	33.57
EES14394	Sorghum	mitochondrion	32.73	30.95
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	35.25	25.13
KRH64430	Soybean	nucleus	17.99	23.26
Zm00001d000424_P001	Maize	plastid	32.73	22.81
KRH53507	Soybean	nucleus	17.63	20.94

Protein Annotations

EntrezGene:100792743	MapMan:22.7.6	Gene3D:3.30.450.50	EMBL:ACUP02004115	EnsemblPlantsGene:GLYMA_06G322700	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
InterPro:IPR010908	UniProt:K7KYP0	EnsemblPlants:KRH56413	ProteinID:KRH56413	ProteinID:KRH56413.1	ProteinID:KRH56414.1
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFscan:PS50859	PANTHER:PTHR21136	PANTHER:PTHR21136:SF88	SMART:SM01270
SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0002339465	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:51094019..51096515

Molecular Weight (calculated)

31217.6 Da

IEP (calculated)

9.355

GRAVY (calculated)

-0.278

Length

278 amino acids

Sequence
(BLAST)

001: MDSIQNKVYY CCVSKGNNVM YVYSGGDQED ENVAALCLER APPFHRWYFE TIGKRTFGFF MEDGYVYFTI VDKGFGNPVV LQFLEHVRDE FKKLSRKGSR
101: GILPNMNSIY IQEKLVPVIR GLITSLESVS HGSSNWRDET SLSFQVDLSP SPSNLNGQIE GASSTKAPLL GKSNKPDKKK VKDHVIAMRD VELEEHRKST
201: DRGARVDSGN LDGVSQGGAG ASVSLQKDMG SMRMRSAPQN IRKKWWRQVR IVLAIDAAVC ILLFIIWLVI CRGISCIR

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.