CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56413	Soybean	cytosol	85.43	92.81
VIT_18s0089g00870.t01	Wine grape	nucleus	48.34	59.84
AT4G10170.1	Thale cress	cytosol	45.03	53.54
PGSC0003DMT400083261	Potato	cytosol	41.39	51.65
CDX90746	Canola	cytosol, extracellular, nucleus	42.72	50.19
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	42.72	50.19
CDY05086	Canola	cytosol, extracellular, nucleus	42.38	49.81
Solyc06g064430.1.1	Tomato	cytosol	38.74	48.55
CDX93763	Canola	cytosol, nucleus, plastid	41.06	46.97
Bra028003.1-P	Field mustard	nucleus	40.73	46.42
AT1G33475.1	Thale cress	cytosol	36.76	43.53
CDY15276	Canola	nucleus	40.73	42.56
CDY70770	Canola	nucleus	40.73	42.56
GSMUA_Achr8P32370_001	Banana	cytosol	31.46	34.8
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	31.46	34.3
TraesCS7B01G221800.1	Wheat	nucleus	31.13	33.94
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	30.46	33.21
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	29.14	31.77
EES14394	Sorghum	mitochondrion	28.15	28.91
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	30.46	23.59
KRH64430	Soybean	nucleus	15.89	22.33
Zm00001d000424_P001	Maize	plastid	28.48	21.55
KRH53507	Soybean	nucleus	15.56	20.09

Protein Annotations

EntrezGene:100788811	MapMan:22.7.6	Gene3D:3.30.450.50	UniProt:A0A0R0KHW2	EMBL:ACUP02002297	EnsemblPlantsGene:GLYMA_04G111600
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR010908	EnsemblPlants:KRH62495	ProteinID:KRH62495	ProteinID:KRH62495.1	ProteinID:KRH62496.1	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFscan:PS50859	PANTHER:PTHR21136	PANTHER:PTHR21136:SF88	SMART:SM01270	SUPFAM:SSF64356
TMHMM:TMhelix	UniParc:UPI0003DE793E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:12397639..12401877

Molecular Weight (calculated)

33943.5 Da

IEP (calculated)

9.377

GRAVY (calculated)

-0.099

Length

302 amino acids

Sequence
(BLAST)

001: MDSIQNKVYY CCVSKGNNVL YVYGGGDQEV EKVAVLCLER APPFHRWYFE TIGKRTFGFF MEDGYVYFTI VDKGLGNPVV LWFLEHVRDE FKKLARKGSR
101: GILPNMNSIY IQEKLVPVIR GLITSLESVS HGGSNWRDET SLSFQVDLSP SPSNLNGQIE GASSTKAPLL GKSNKPDKKK VKDHVIAMRD VELEEHQKST
201: DRGARVDSCN LDGVSQGGAG ASVSLQKDMG SMRMRSAPQN IRKKWWRQVR IVLAIDAAVC ILLFIICFIR RKQCVGMVKY VSKTLLFLCD CLSFLLAKLL
301: CL

Best Arabidopsis Sequence Match ( AT1G33475.1 )
(BLAST)

001: MGSIQNTVHY CCVSRDNQIM YAYNNAGDHR NNESLAALCL EKTPPFHKWY FETRGKKTFG FLMKDDFVYF AIVDDVFKKS SVLDFLEKLR DELKEANKKN
101: SRGSFSGSIS FSNVQDQIVR RLIASLEFDH TCLPLSSPSI DGAEQSYASN SKAPLLGRSN KQDKKKGRDH AHSLRGIEIE EHRKSNDRGN VTECSNASSE
201: SATYVPRRGR SGGSQSIERK WRRQVKIVLA IDIAICLTLL GVWLAICHGI ECTRS

Arabidopsis Description

PHYL1.2Phytolongin Phyl1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WF5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.