Factsheet for Zm00001d000424_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14394	Sorghum	mitochondrion	56.89	77.21
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	50.13	72.2
TraesCS7B01G221800.1	Wheat	nucleus	49.87	71.84
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	49.12	70.76
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	47.87	68.95
GSMUA_Achr8P32370_001	Banana	cytosol	35.34	51.65
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	46.62	47.69
AT4G10170.1	Thale cress	cytosol	22.31	35.04
KRH56413	Soybean	cytosol	22.81	32.73
PGSC0003DMT400083261	Potato	cytosol	19.8	32.64
CDX90746	Canola	cytosol, extracellular, nucleus	20.8	32.3
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	20.8	32.3
CDY05086	Canola	cytosol, extracellular, nucleus	20.55	31.91
AT1G33475.1	Thale cress	cytosol	20.05	31.37
VIT_18s0089g00870.t01	Wine grape	nucleus	19.05	31.15
Solyc06g064430.1.1	Tomato	cytosol	18.8	31.12
CDX93763	Canola	cytosol, nucleus, plastid	20.05	30.3
Bra028003.1-P	Field mustard	nucleus	20.05	30.19
KRH62495	Soybean	cytosol	21.55	28.48
CDY70770	Canola	nucleus	19.8	27.34
CDY15276	Canola	nucleus	19.8	27.34

Protein Annotations

EnsemblPlants:Zm00001d000424_P001	EnsemblPlants:Zm00001d000424_T001	EnsemblPlantsGene:Zm00001d000424	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PANTHER:PTHR21136	PANTHER:PTHR21136:SF88	PFscan:PS50859	SEG:seg	SUPFAM:SSF64356
TMHMM:TMhelix	UniParc:UPI0004DE8755	UniProt:A0A1X7YIS1	MapMan:22.7.6	:	:

Description

Phytolongin Phyl1.1

Coordinates

chrB73V4_ctg105:+:38570..40097

Molecular Weight (calculated)

42457.7 Da

IEP (calculated)

10.106

GRAVY (calculated)

-0.221

Length

399 amino acids

Sequence
(BLAST)

001: MVARSMSNPS PIRILFFLCA AAAHRPRPSR LSPLLPPSSR LFPSWSQRLH PLPLQIPARD AAGCYLSGSS SSGPGLDPRS ADFHPALTRC PVTCGFCCAG
101: RLIRRAPWMN SRRSRSVKLV SARANGDGAL EVDVPEEEGD ARMSSSAANT VYCCIARGRS VIYRYSSKGG DPQAEATAAL CLDRSPPHHR HYVHTSGRRS
201: YGYLTADGHT FFAIIDPSVG SAGALQFLER VRDAFRSSAG VGGRQPHESL VPAVQRLVAS LEKMPHAAFV LDGAGAGAGD GDGCTSSSKA PLLGKSGSRK
301: EKRRSRDKLS SSAAGAGAGG CEDEHHGTRA VRIDVMPAED VGGMSLERSG SQSRLRRQQS SRSLWMRHVK VIVAVDAVVC LVLLAAWLAV CKGFQCVSG

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.