Factsheet for Solyc06g064430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083261	Potato	cytosol	91.7	91.32
KRH56413	Soybean	cytosol	50.62	43.88
VIT_18s0089g00870.t01	Wine grape	nucleus	43.57	43.03
AT4G10170.1	Thale cress	cytosol	42.74	40.55
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	42.32	39.69
CDX90746	Canola	cytosol, extracellular, nucleus	42.32	39.69
CDY05086	Canola	cytosol, extracellular, nucleus	41.91	39.3
KRH62495	Soybean	cytosol	48.55	38.74
Bra028003.1-P	Field mustard	nucleus	42.32	38.49
CDX93763	Canola	cytosol, nucleus, plastid	41.91	38.26
AT1G33475.1	Thale cress	cytosol	39.42	37.25
CDY15276	Canola	nucleus	41.49	34.6
CDY70770	Canola	nucleus	41.49	34.6
GSMUA_Achr8P32370_001	Banana	cytosol	34.44	30.4
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	33.2	28.88
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	33.2	28.88
TraesCS7B01G221800.1	Wheat	nucleus	32.78	28.52
Solyc03g083070.1.1	Tomato	cytosol	29.88	27.38
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	28.22	24.55
EES14394	Sorghum	mitochondrion	28.63	23.47
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	32.37	20.0
Zm00001d000424_P001	Maize	plastid	31.12	18.8

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	UniProt:K4C775	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF88	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc06g064430.1	EnsemblPlants:Solyc06g064430.1.1	TMHMM:TMhelix	UniParc:UPI0002766EED
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:40120475..40121200

Molecular Weight (calculated)

27113.8 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.142

Length

241 amino acids

Sequence
(BLAST)

001: MGSVQNSVYY CSVSKGGQLI YAYNGGDHET ENLAALCLER VPPFHKWYFQ TMAKKTFGFL MEDEGYVYFA IVNEGLGNDK VLSFLEQLKD EFRKVGKKGS
101: CWTMSNLNSI CLQGELVPVI SPCNNATGKI EGGDSTNTLL LGKPSRQEKK KRNDHVIAIR DAELEEDQKS TELVDTNDQD AVVIPIMSQK ELCLVRNITS
201: TQNFQKKWCR HVRVILAIDV VVCLVLLVIW LVICEGTKCL H

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.