Factsheet for Os08t0110300-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	76.17	76.17
TraesCS7B01G221800.1	Wheat	nucleus	75.81	75.81
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	75.81	75.81
EES14394	Sorghum	mitochondrion	73.65	69.39
GSMUA_Achr8P32370_001	Banana	cytosol	53.43	54.21
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	68.59	48.72
Zm00001d000424_P001	Maize	plastid	68.95	47.87
AT4G10170.1	Thale cress	cytosol	32.49	35.43
AT1G33475.1	Thale cress	cytosol	31.41	34.12
CDY05086	Canola	cytosol, extracellular, nucleus	31.05	33.46
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	31.05	33.46
KRH56413	Soybean	cytosol	33.57	33.45
CDX90746	Canola	cytosol, extracellular, nucleus	30.69	33.07
VIT_18s0089g00870.t01	Wine grape	nucleus	28.88	32.79
CDX93763	Canola	cytosol, nucleus, plastid	30.69	32.2
Bra028003.1-P	Field mustard	nucleus	30.69	32.08
KRH62495	Soybean	cytosol	31.77	29.14
CDY15276	Canola	nucleus	29.96	28.72
CDY70770	Canola	nucleus	29.96	28.72
PGSC0003DMT400083261	Potato	cytosol	24.91	28.51
Solyc06g064430.1.1	Tomato	cytosol	24.55	28.22

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	EntrezGene:4344478	EMBL:AK067360	ProteinID:BAD09536.1	ProteinID:BAF22732.1
ProteinID:BAT03497.1	ProteinID:EEE67918.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0031201	InterPro:Longin-like_dom_sf	EnsemblPlantsGene:Os08g0110300	EnsemblPlants:Os08t0110300-01	PANTHER:PTHR21136
PANTHER:PTHR21136:SF88	UniProt:Q6ZC59	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI000023AE5C	RefSeq:XP_015650386.1
SEG:seg	:	:	:	:	:

Description

Longin domain containing protein. (Os08t0110300-01)

Coordinates

chr8:-:539834..541608

Molecular Weight (calculated)

30647.6 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.317

Length

277 amino acids

Sequence
(BLAST)

001: MNSRRSRSVK LVSTRAKPLE VEIAKEDERM SSSADNTVYC CIAKGRKIIY CYNSKDGDPH METTAALCLE NAPSYHRHYI HTAGSRSYGY LMADGHTFFA
101: IIDPSVGNVG ALQFLERVRE VFRTVNRSGF HDSLVPAVQR LVASLEKMPH ATFDLEESVE KGEPSDSSSC TSSKVPLLGR SGSRKDKKKA KEKAASAAVC
201: EDEQHGTRGV RIDVPPEEVG GMSLERSASQ SRLRRQHSSR SLWVRHVKII IVVDAIICIL LFAAWLAVCK GFQCVSS

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.