Factsheet for VIT_18s0089g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56413	Soybean	cytosol	60.25	52.88
KRH62495	Soybean	cytosol	59.84	48.34
PGSC0003DMT400083261	Potato	cytosol	45.08	45.45
AT4G10170.1	Thale cress	cytosol	47.13	45.28
Bra028003.1-P	Field mustard	nucleus	47.95	44.15
CDX93763	Canola	cytosol, nucleus, plastid	47.54	43.94
Solyc06g064430.1.1	Tomato	cytosol	43.03	43.57
CDY05086	Canola	cytosol, extracellular, nucleus	44.67	42.41
CDX90746	Canola	cytosol, extracellular, nucleus	44.67	42.41
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	44.67	42.41
AT1G33475.1	Thale cress	cytosol	42.21	40.39
CDY15276	Canola	nucleus	45.9	38.75
CDY70770	Canola	nucleus	45.9	38.75
GSMUA_Achr8P32370_001	Banana	cytosol	38.11	34.07
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	35.66	31.41
TraesCS7B01G221800.1	Wheat	nucleus	35.25	31.05
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	34.84	30.69
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	32.79	28.88
EES14394	Sorghum	mitochondrion	29.51	24.49
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	34.43	21.54
VIT_16s0098g01770.t01	Wine grape	cytosol	23.77	21.25
Zm00001d000424_P001	Maize	plastid	31.15	19.05

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	ProteinID:CCB44122	ProteinID:CCB44122.1	UniProt:F6GVY7	EMBL:FN594956
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFscan:PS50859	PANTHER:PTHR21136	PANTHER:PTHR21136:SF88
SMART:SM01270	SUPFAM:SSF64356	UniParc:UPI00021091E5	ArrayExpress:VIT_18s0089g00870	EnsemblPlantsGene:VIT_18s0089g00870	EnsemblPlants:VIT_18s0089g00870.t01
unigene:Vvi.10397	RefSeq:XP_003634631	RefSeq:XP_003634631.1	RefSeq:XP_003634632	RefSeq:XP_003634632.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:28692246..28694490

Molecular Weight (calculated)

27278.4 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.550

Length

244 amino acids

Sequence
(BLAST)

001: MGSFENTVYY CCVSKGNRIL YAYGGGGHEI ENLAALCLER APPFHKWYFQ TMGKKTFGFL MEDGHVYFAI VDEGLGNPGV LQFLEHMRDE FKKVARKDSR
101: GSPSSFNSLH IQDQLVPIIH RLISSLEHVS QTSNNWIAES PLPHHVGLSP SPSDANGQME AASSTKAPLL GKFSKQEKKK KMKDPVIAMR DIELEEHRKS
201: TDRGIKIDSG NSDSNSQGQA LKASERSVHR GDYLAFPFSY QTKL

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.