Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- extracellular 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90746 | Canola | cytosol, extracellular, nucleus | 97.28 | 97.28 |
| AT4G10170.1 | Thale cress | cytosol | 70.43 | 71.26 |
| CDX93763 | Canola | cytosol, nucleus, plastid | 59.53 | 57.95 |
| CDY15276 | Canola | nucleus | 57.98 | 51.56 |
| CDY70770 | Canola | nucleus | 57.98 | 51.56 |
| KRH56413 | Soybean | cytosol | 51.36 | 47.48 |
| PGSC0003DMT400083261 | Potato | cytosol | 42.41 | 45.04 |
| VIT_18s0089g00870.t01 | Wine grape | nucleus | 42.41 | 44.67 |
| KRH62495 | Soybean | cytosol | 49.81 | 42.38 |
| Solyc06g064430.1.1 | Tomato | cytosol | 39.3 | 41.91 |
| GSMUA_Achr8P32370_001 | Banana | cytosol | 35.8 | 33.7 |
| Os08t0110300-01 | Rice | cytosol, mitochondrion, nucleus | 33.46 | 31.05 |
| TraesCS7D01G318000.1 | Wheat | mitochondrion, nucleus, peroxisome | 31.91 | 29.6 |
| TraesCS7B01G221800.1 | Wheat | nucleus | 31.52 | 29.24 |
| HORVU7Hr1G076840.1 | Barley | mitochondrion, nucleus, peroxisome | 31.13 | 28.88 |
| EES14394 | Sorghum | mitochondrion | 31.91 | 27.89 |
| CDY68387 | Canola | extracellular, plasma membrane, plastid | 21.01 | 22.69 |
| CDY50497 | Canola | extracellular | 23.35 | 22.56 |
| CDY19649 | Canola | extracellular | 22.96 | 22.1 |
| CDX96172 | Canola | extracellular | 22.18 | 21.51 |
| CDY29864 | Canola | cytosol, plasma membrane, plastid | 20.62 | 21.2 |
| CDY27036 | Canola | extracellular, plasma membrane | 21.01 | 21.18 |
| Zm00001d000424_P001 | Maize | plastid | 31.91 | 20.55 |
| TraesCS7A01G321000.1 | Wheat | cytosol, golgi, plasma membrane | 31.13 | 20.51 |
Protein Annotations
| EnsemblPlants:CDY05086 | EnsemblPlantsGene:GSBRNA2T00119849001 | Gene3D:3.30.450.50 | GO:A0A078EV26 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf |
| InterPro:Longin_dom | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF162 | PFscan:PS50859 | ProteinID:CDY05086 | ProteinID:CDY05086.1 |
| SMART:SM01270 | SUPFAM:SSF64356 | TMHMM:TMhelix | UniParc:UPI0004EC290A | MapMan:22.7.6 | : |
Description
BnaC03g28840D
Coordinates
chrLK031959:+:545191..546192
Molecular Weight (calculated)
28471.8 Da
IEP (calculated)
8.558
GRAVY (calculated)
-0.306
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLIKNTVHY CCVSRDNQIL YAYNGGDQSN ESLAGLCLEK TPPFHAWYFE SIGKRRFGFL IGDGFVYFAI VDEALGKVSV LKFLEHLRDE FKKAARKNCR
101: GSFTAAIGSI NVDDVVSKLI ASLERVAAET ANNELKTSNS NLAEQSEGVS STKAPLLGRS SKQEKKRGKD HVVSVRGAEL DEHRNSNDRA DRCEASSAAE
201: TSSQKECVPR RGRSGSHSFE WKWRRLVQIV LAIDAAICLT LFCVWLAICE GIKCTRS
101: GSFTAAIGSI NVDDVVSKLI ASLERVAAET ANNELKTSNS NLAEQSEGVS STKAPLLGRS SKQEKKRGKD HVVSVRGAEL DEHRNSNDRA DRCEASSAAE
201: TSSQKECVPR RGRSGSHSFE WKWRRLVQIV LAIDAAICLT LFCVWLAICE GIKCTRS
001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS
Arabidopsis Description
PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.