CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	99.22	99.22
CDY05086	Canola	cytosol, extracellular, nucleus	97.28	97.28
AT4G10170.1	Thale cress	cytosol	70.82	71.65
CDX93763	Canola	cytosol, nucleus, plastid	59.14	57.58
CDY15276	Canola	nucleus	57.59	51.21
CDY70770	Canola	nucleus	57.59	51.21
KRH56413	Soybean	cytosol	51.75	47.84
PGSC0003DMT400083261	Potato	cytosol	42.8	45.45
VIT_18s0089g00870.t01	Wine grape	nucleus	42.41	44.67
KRH62495	Soybean	cytosol	50.19	42.72
Solyc06g064430.1.1	Tomato	cytosol	39.69	42.32
GSMUA_Achr8P32370_001	Banana	cytosol	36.19	34.07
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	33.07	30.69
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	31.91	29.6
TraesCS7B01G221800.1	Wheat	nucleus	31.52	29.24
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	31.13	28.88
EES14394	Sorghum	mitochondrion	31.91	27.89
CDY68387	Canola	extracellular, plasma membrane, plastid	20.62	22.27
CDY50497	Canola	extracellular	22.96	22.18
CDY19649	Canola	extracellular	22.57	21.72
CDX96172	Canola	extracellular	21.79	21.13
Zm00001d000424_P001	Maize	plastid	32.3	20.8
CDY29864	Canola	cytosol, plasma membrane, plastid	20.23	20.8
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	31.13	20.51
CDY27036	Canola	extracellular, plasma membrane	20.23	20.39

Protein Annotations

EnsemblPlants:CDX90746	EnsemblPlantsGene:GSBRNA2T00151438001	Gene3D:3.30.450.50	GO:A0A078DN99	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PANTHER:PTHR21136	PANTHER:PTHR21136:SF162	PFscan:PS50859	ProteinID:CDX90746	ProteinID:CDX90746.1
SMART:SM01270	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0004EE0B74	MapMan:22.7.6	:

Description

BnaA03g24260D

Coordinates

chrLK031864:+:295586..296766

Molecular Weight (calculated)

28479.8 Da

IEP (calculated)

8.412

GRAVY (calculated)

-0.325

Length

257 amino acids

Sequence
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YAYNGGDQSN ESLAGLCLEK TPPFHAWYFE SIGKRRFGFL TGDGFVYFAI VDEVLGKVSV LKFLEHLRDE FKKAARKNCR
101: GSFTAAIGSI DVDDVVSKLI ASLERVAAET ANNELKTSNS NLAEQSEGVS STKAPLLGRS SKQEKKRGKD HVVSVRGAEL DEHRNSNDRA ERCEGSSAAE
201: TSSQKECVPR RGRSGSNSFE WKWRRLVQIV LAIDAAICLT LFCIWLAICE GIKCTRS

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.