CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50497	Canola	extracellular	85.77	86.09
CDY27036	Canola	extracellular, plasma membrane	73.03	76.47
CDX96172	Canola	extracellular	73.41	73.96
AT5G52990.1	Thale cress	extracellular, plasma membrane	71.91	70.59
CDY68387	Canola	extracellular, plasma membrane, plastid	49.44	55.46
CDY29864	Canola	cytosol, plasma membrane, plastid	48.31	51.6
VIT_16s0098g01770.t01	Wine grape	cytosol	38.2	37.36
PGSC0003DMT400047728	Potato	cytosol	34.83	35.5
KRH64430	Soybean	nucleus	28.46	35.35
Solyc03g083070.1.1	Tomato	cytosol	34.46	34.98
KRH53507	Soybean	nucleus	29.21	33.33
CDX93763	Canola	cytosol, nucleus, plastid	22.85	23.11
CDY05086	Canola	cytosol, extracellular, nucleus	22.1	22.96
CDX90746	Canola	cytosol, extracellular, nucleus	21.72	22.57
CDY15276	Canola	nucleus	21.72	20.07
CDY70770	Canola	nucleus	21.72	20.07

Protein Annotations

EnsemblPlants:CDY19649	EnsemblPlantsGene:GSBRNA2T00009344001	Gene3D:3.30.450.50	GO:A0A078G2J8	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136
PANTHER:PTHR21136:SF93	ProteinID:CDY19649	ProteinID:CDY19649.1	SEG:seg	SUPFAM:SSF64356	TMHMM:TMhelix
UniParc:UPI0004EEF275	UniProt:A0A078G2J8	MapMan:22.7.6	:	:	:

Description

BnaC09g29050DBnaC09g29050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2J8]

Coordinates

chrLK032099:+:255246..256147

Molecular Weight (calculated)

29909.0 Da

IEP (calculated)

6.983

GRAVY (calculated)

-0.236

Length

267 amino acids

Sequence
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFASEEEAG IEDVALRCIE NTPPHHSIFS HTVGKKTYTF SIDEESFVYF AILDEAMEKP ESFWLLNRLR SAVEDLVRGG
101: ETLTNPSPRC LQAKMDPVFA EIVGGVDVDL ELDMDLVGSP RSVARDSRNP SIDSSKGRRA SLMPLLGKQL KALKKKNKRL HTEDSGDVGM IKETSERKVD
201: LCGNGNGGVS RKELRNGLLT DHHHHRQKAK QMWKKHVWFV LIFDFCICAL LFGIWLWVCE GFQCVNG

Best Arabidopsis Sequence Match ( AT5G52990.1 )
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG

Arabidopsis Description

PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.