Factsheet for VIT_16s0098g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083070.1.1	Tomato	cytosol	47.25	49.05
PGSC0003DMT400047728	Potato	cytosol	45.42	47.33
CDY27036	Canola	extracellular, plasma membrane	40.29	43.14
Bra022619.1-P	Field mustard	extracellular, plasma membrane	39.56	42.35
CDX96172	Canola	extracellular	39.93	41.13
AT5G52990.1	Thale cress	extracellular, plasma membrane	40.29	40.44
Bra003092.1-P	Field mustard	extracellular	38.46	39.47
CDY50497	Canola	extracellular	38.1	39.1
CDY68387	Canola	extracellular, plasma membrane, plastid	33.33	38.24
CDY19649	Canola	extracellular	37.36	38.2
AT4G27840.1	Thale cress	plasma membrane	36.26	38.08
KRH64430	Soybean	nucleus	29.67	37.67
Bra019024.1-P	Field mustard	cytosol, plasma membrane, plastid	33.7	36.8
CDY29864	Canola	cytosol, plasma membrane, plastid	32.97	36.0
KRH53507	Soybean	nucleus	29.67	34.62
VIT_18s0089g00870.t01	Wine grape	nucleus	21.25	23.77

Protein Annotations

EntrezGene:100262242	wikigene:100262242	MapMan:22.7.6	Gene3D:3.30.450.50	ProteinID:CCB48051	ProteinID:CCB48051.1
UniProt:F6H796	EMBL:FN595247	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR010908	EntrezGene:LOC100262242	wikigene:LOC100262242
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFscan:PS50859	PANTHER:PTHR21136	PANTHER:PTHR21136:SF93	SUPFAM:SSF64356
TIGR:TC69002	TMHMM:TMhelix	UniParc:UPI00015CB9CA	ArrayExpress:VIT_16s0098g01770	EnsemblPlantsGene:VIT_16s0098g01770	EnsemblPlants:VIT_16s0098g01770.t01
unigene:Vvi.15743	RefSeq:XP_002277435	RefSeq:XP_002277435.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:-:21843039..21844437

Molecular Weight (calculated)

31104.7 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.314

Length

273 amino acids

Sequence
(BLAST)

001: MISDPKLVFY ACISKGTTIL AEFNSVDPDL QTLALKCLEK APALHSMFSH TVRQRTYTFL LDEPDPYVYF GIFDEKMERY ETLWFLNRVK EAFKGMIRND
101: PIKNFDDLSS HCFQGEFNPV FRQLLSHPVE PEQLNLDLNS SLPQNVLKDK RNLSLDCSTR GKRIVSLPLL GKPGKGLKKK KRLSGEVNGD TRDHLMENKV
201: VDVSDDGGSQ TRDFPASMQK NGGYLGDMAA GRQKAKQVWK QQVWMVLILD LCVCSVLFGV WLWICRGFRC VDG

Best Arabidopsis Sequence Match ( AT5G52990.1 )
(BLAST)

001: MISNPSLLSY TCIAKGTVVL AEFVSRQEPG IEAIALRCIE NTPPHHSMFS HTVHKKTYTF AIDDDSFVYF SISDESMEKP ESFWVLNRLR SAIEDLIKDG
101: GSDVETLINP VSHCLQLKLD PVFAEIVGVV DLELLDMDLV GSPRSVARES RNPSIDSSKG RRAALMPLLG KPLKALKKKK RLHNEAKGGD SCEVGSIQEI
201: SEKNVDLCGN GNNGVLRKEL RNGLLSDHHH RQKAKQIWKK HVWVVLMFDF CICAVLFGIW LWICEGFQCI QG

Arabidopsis Description

PHYL2.2Phytolongin Phyl2.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVV3]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.