Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047728 | Potato | cytosol | 91.64 | 91.98 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 49.05 | 47.25 |
| CDY68387 | Canola | extracellular, plasma membrane, plastid | 34.6 | 38.24 |
| CDY27036 | Canola | extracellular, plasma membrane | 35.74 | 36.86 |
| KRH64430 | Soybean | nucleus | 30.04 | 36.74 |
| Bra019024.1-P | Field mustard | cytosol, plasma membrane, plastid | 34.6 | 36.4 |
| KRH53507 | Soybean | nucleus | 32.32 | 36.32 |
| AT4G27840.1 | Thale cress | plasma membrane | 35.74 | 36.15 |
| Bra022619.1-P | Field mustard | extracellular, plasma membrane | 34.98 | 36.08 |
| CDY29864 | Canola | cytosol, plasma membrane, plastid | 34.22 | 36.0 |
| AT5G52990.1 | Thale cress | extracellular, plasma membrane | 36.5 | 35.29 |
| CDX96172 | Canola | extracellular | 35.36 | 35.09 |
| Bra003092.1-P | Field mustard | extracellular | 35.36 | 34.96 |
| CDY50497 | Canola | extracellular | 34.98 | 34.59 |
| CDY19649 | Canola | extracellular | 34.98 | 34.46 |
| Solyc06g064430.1.1 | Tomato | cytosol | 27.38 | 29.88 |
Protein Annotations
| MapMan:22.7.6 | Gene3D:3.30.450.50 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | UniProt:K4BI83 | InterPro:Longin-like_dom_sf | PANTHER:PTHR21136 |
| PANTHER:PTHR21136:SF93 | SUPFAM:SSF64356 | EnsemblPlantsGene:Solyc03g083070.1 | EnsemblPlants:Solyc03g083070.1.1 | TMHMM:TMhelix | UniParc:UPI0002768928 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:52903611..52904402
Molecular Weight (calculated)
29539.8 Da
IEP (calculated)
9.094
GRAVY (calculated)
-0.214
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADPNLVYY SCVAKGTTIL AEINSKDADL GSLALKCLEK TPPLHTFFSH TIRNRTYTFL IENPYVFFAI FDEKIDKSDG LAFLKGVEEA FRGVIERSSG
101: KKRLDKLNSH CFQGELNPVF HQLLDSNFGV DEGSNSPRSE LDHGRSTSLD SVKGKKIGSM PLLADAASSL KLKKKRLFGQ FKKRNDEMCE KRVDVSDDGI
201: RLSRDFSVTM QKNGLIHGEG GHQKAKKVWK KQVWVVLSLD LIVCTILFIV WLCVCRGFKC IDA
101: KKRLDKLNSH CFQGELNPVF HQLLDSNFGV DEGSNSPRSE LDHGRSTSLD SVKGKKIGSM PLLADAASSL KLKKKRLFGQ FKKRNDEMCE KRVDVSDDGI
201: RLSRDFSVTM QKNGLIHGEG GHQKAKKVWK KQVWVVLSLD LIVCTILFIV WLCVCRGFKC IDA
001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
Arabidopsis Description
PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.