Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68387 | Canola | extracellular, plasma membrane, plastid | 60.77 | 66.39 |
| Bra019024.1-P | Field mustard | cytosol, plasma membrane, plastid | 62.69 | 65.2 |
| CDY29864 | Canola | cytosol, plasma membrane, plastid | 59.62 | 62.0 |
| AT5G52990.1 | Thale cress | extracellular, plasma membrane | 60.77 | 58.09 |
| VIT_16s0098g01770.t01 | Wine grape | cytosol | 38.08 | 36.26 |
| Solyc03g083070.1.1 | Tomato | cytosol | 36.15 | 35.74 |
| PGSC0003DMT400047728 | Potato | cytosol | 35.77 | 35.5 |
| KRH64430 | Soybean | nucleus | 26.92 | 32.56 |
| KRH53507 | Soybean | nucleus | 28.08 | 31.2 |
| AT4G10170.1 | Thale cress | cytosol | 25.0 | 25.59 |
| AT1G33475.1 | Thale cress | cytosol | 22.69 | 23.14 |
Protein Annotations
| MapMan:22.7.6 | Gene3D:3.30.450.50 | EntrezGene:828897 | ProteinID:AEE85399.1 | ArrayExpress:AT4G27840 | EnsemblPlantsGene:AT4G27840 |
| RefSeq:AT4G27840 | TAIR:AT4G27840 | RefSeq:AT4G27840-TAIR-G | EnsemblPlants:AT4G27840.1 | TAIR:AT4G27840.1 | EMBL:AY069904 |
| EMBL:AY142001 | ProteinID:CAB43972.1 | ProteinID:CAB81433.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 | RefSeq:NP_194513.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF93 | UniProt:Q9STP2 |
| TMHMM:TMhelix | UniParc:UPI000009D682 | SEG:seg | : | : | : |
Description
PHYL2.1Phytolongin Phyl2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9STP2]
Coordinates
chr4:-:13864919..13866607
Molecular Weight (calculated)
29204.4 Da
IEP (calculated)
8.500
GRAVY (calculated)
-0.247
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSNQRMLFY SCIAKGTVIL AEFASKEEPG IEDLALRCIE NVPPHHSMIS HTVHKRTYAL IIDGLFSYFA ILDEVVAKSE SVWLFNRLKS ATESLMEDGS
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
101: TADSLDNPTQ HCLQSKLDPV FAEIAAIGGN HNKDLELEFG SPRSIAREIK SNNQSLDSSK GRKGGALMPL LGKPLRVLKN KKRLQTEAKS EGHWNEKKMD
201: LGGGGKGVRN GLIHDHHHRQ KAKQIWRKHV WIVLMFDLCI CLVLFGIWLW ICQGFQCIDG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.