Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000701.1-P | Field mustard | cytosol, extracellular, nucleus | 71.65 | 70.82 |
| CDX90746 | Canola | cytosol, extracellular, nucleus | 71.65 | 70.82 |
| CDY05086 | Canola | cytosol, extracellular, nucleus | 71.26 | 70.43 |
| AT1G33475.1 | Thale cress | cytosol | 59.45 | 59.22 |
| KRH56413 | Soybean | cytosol | 55.91 | 51.08 |
| VIT_18s0089g00870.t01 | Wine grape | nucleus | 45.28 | 47.13 |
| KRH62495 | Soybean | cytosol | 53.54 | 45.03 |
| PGSC0003DMT400083261 | Potato | cytosol | 42.52 | 44.63 |
| Solyc06g064430.1.1 | Tomato | cytosol | 40.55 | 42.74 |
| GSMUA_Achr8P32370_001 | Banana | cytosol | 41.34 | 38.46 |
| HORVU7Hr1G076840.1 | Barley | mitochondrion, nucleus, peroxisome | 36.61 | 33.57 |
| TraesCS7D01G318000.1 | Wheat | mitochondrion, nucleus, peroxisome | 36.61 | 33.57 |
| TraesCS7B01G221800.1 | Wheat | nucleus | 36.61 | 33.57 |
| Os08t0110300-01 | Rice | cytosol, mitochondrion, nucleus | 35.43 | 32.49 |
| EES14394 | Sorghum | mitochondrion | 33.46 | 28.91 |
| AT4G27840.1 | Thale cress | plasma membrane | 25.59 | 25.0 |
| TraesCS7A01G321000.1 | Wheat | cytosol, golgi, plasma membrane | 36.22 | 23.59 |
| Zm00001d000424_P001 | Maize | plastid | 35.04 | 22.31 |
| AT5G52990.1 | Thale cress | extracellular, plasma membrane | 23.23 | 21.69 |
Protein Annotations
| MapMan:22.7.6 | Gene3D:3.30.450.50 | EntrezGene:826608 | UniProt:A0A178UXF3 | ProteinID:AEE82850.1 | ProteinID:AEE82851.1 |
| EMBL:AK227497 | ArrayExpress:AT4G10170 | EnsemblPlantsGene:AT4G10170 | RefSeq:AT4G10170 | TAIR:AT4G10170 | RefSeq:AT4G10170-TAIR-G |
| EnsemblPlants:AT4G10170.1 | TAIR:AT4G10170.1 | Unigene:At.33648 | EMBL:BT004609 | ProteinID:CAB39769.1 | ProteinID:CAB78140.1 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006887 |
| GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | InterPro:IPR010908 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom |
| RefSeq:NP_192755.1 | RefSeq:NP_974527.1 | ProteinID:OAO98210.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50859 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF162 |
| UniProt:Q9SN26 | SMART:SM01270 | SUPFAM:SSF64356 | TMHMM:TMhelix | UniParc:UPI000000C3DD | SEG:seg |
Description
PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
Coordinates
chr4:+:6344301..6345610
Molecular Weight (calculated)
28362.7 Da
IEP (calculated)
8.053
GRAVY (calculated)
-0.311
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.