Factsheet for Bra000701.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90746	Canola	cytosol, extracellular, nucleus	99.22	99.22
AT4G10170.1	Thale cress	cytosol	70.82	71.65
Bra028003.1-P	Field mustard	nucleus	59.14	57.36
KRH56413	Soybean	cytosol	51.75	47.84
PGSC0003DMT400083261	Potato	cytosol	42.8	45.45
VIT_18s0089g00870.t01	Wine grape	nucleus	42.41	44.67
KRH62495	Soybean	cytosol	50.19	42.72
Solyc06g064430.1.1	Tomato	cytosol	39.69	42.32
GSMUA_Achr8P32370_001	Banana	cytosol	35.8	33.7
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	33.46	31.05
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	31.91	29.6
TraesCS7B01G221800.1	Wheat	nucleus	31.52	29.24
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	31.13	28.88
EES14394	Sorghum	mitochondrion	31.91	27.89
Bra003092.1-P	Field mustard	extracellular	22.57	21.8
Bra019024.1-P	Field mustard	cytosol, plasma membrane, plastid	20.62	21.2
Zm00001d000424_P001	Maize	plastid	32.3	20.8
Bra022619.1-P	Field mustard	extracellular, plasma membrane	20.62	20.78
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	31.13	20.51

Protein Annotations

EnsemblPlants:Bra000701.1	EnsemblPlants:Bra000701.1-P	EnsemblPlantsGene:Bra000701	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PANTHER:PTHR21136	PANTHER:PTHR21136:SF162	PFscan:PS50859
SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0002540304	UniProt:M4C923	MapMan:22.7.6	:

Description

AT4G10170 (E=5e-110) | synaptobrevin-related family protein

Coordinates

chrA03:+:12545462..12546235

Molecular Weight (calculated)

28501.9 Da

IEP (calculated)

8.558

GRAVY (calculated)

-0.324

Length

257 amino acids

Sequence
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YAYNGGDQSN ESLAGLCLEK TPPFHAWYFE SIGKRRFGFL TGDGFVYFAI VDEVLGKVSV LKFLEHLRDE FKKAARKNCR
101: GSFTAAIGSI NVDDVVSKLI ASLERVAAET ANNELKTSNS NLAEQSEGVS STKAPLLGRS SKQEKKRGKD HVVSVRGAEL DEHRNSNDRA ERCEGSSAAE
201: TSSQKECVPR RGRSGSHSFE WKWRRLVQIV LAIDAAICLT LFCIWLAICE GIKCTRS

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.