CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0110300-01	Rice	cytosol, mitochondrion, nucleus	69.39	73.65
TraesCS7B01G221800.1	Wheat	nucleus	68.71	72.92
TraesCS7D01G318000.1	Wheat	mitochondrion, nucleus, peroxisome	68.37	72.56
HORVU7Hr1G076840.1	Barley	mitochondrion, nucleus, peroxisome	68.37	72.56
Zm00001d000424_P001	Maize	plastid	77.21	56.89
GSMUA_Achr8P32370_001	Banana	cytosol	46.6	50.18
TraesCS7A01G321000.1	Wheat	cytosol, golgi, plasma membrane	62.93	47.44
AT4G10170.1	Thale cress	cytosol	28.91	33.46
KRH56413	Soybean	cytosol	30.95	32.73
CDY05086	Canola	cytosol, extracellular, nucleus	27.89	31.91
CDX90746	Canola	cytosol, extracellular, nucleus	27.89	31.91
Bra000701.1-P	Field mustard	cytosol, extracellular, nucleus	27.89	31.91
AT1G33475.1	Thale cress	cytosol	26.53	30.59
VIT_18s0089g00870.t01	Wine grape	nucleus	24.49	29.51
PGSC0003DMT400083261	Potato	cytosol	24.15	29.34
Bra028003.1-P	Field mustard	nucleus	26.19	29.06
CDX93763	Canola	cytosol, nucleus, plastid	25.85	28.79
Solyc06g064430.1.1	Tomato	cytosol	23.47	28.63
KRH62495	Soybean	cytosol	28.91	28.15
CDY15276	Canola	nucleus	25.85	26.3
CDY70770	Canola	nucleus	25.85	26.3

Protein Annotations

MapMan:22.7.6	Gene3D:3.30.450.50	EntrezGene:8068542	UniProt:C5YLW7	EnsemblPlants:EES14394	ProteinID:EES14394
ProteinID:EES14394.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	InterPro:Longin-like_dom_sf	PANTHER:PTHR21136	PANTHER:PTHR21136:SF88	EnsemblPlantsGene:SORBI_3007G011000
SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI0001A8790C	RefSeq:XP_002444899.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:979929..982450

Molecular Weight (calculated)

31627.4 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.335

Length

294 amino acids

Sequence
(BLAST)

001: MNSRRSRSVK LVSARANRAL EVDIAEEGED ARMSSSAANT VYCCIAKGRS VVYRYSSSKG GGDGDPQVEA TAALCLDISP PHHRHYVHTA GCRSYGYLMA
101: DGHTFFAIID PSVGSAGALQ FLERVRDAFR SSSSRSNGFH DSLVPAVQRL VASLEKMPHA TFVLEDGATE RGGGDGSNGC TSSSSKVPLL GKSGSRKEKR
201: RSRDKLASAA AGDSEDEHHG TRAVRIDVPN EEGAGGMSLE RSLSQSRLRR QQQQPSRSLW MRHVKVIIIV DAVVCLVLFA AWLAVCKGFQ CVSG

Best Arabidopsis Sequence Match ( AT4G10170.2 )
(BLAST)

001: MGLIKNTVHY CCVSRDNQIL YSYNGGDQTN ESLAALCLEK SPPFHTWYFE TIGKRRFGFL IGDGFVYFAI VDEVLKRSSV LKFLEHLRDE FKKAARENSR
101: GSFTAMIGSI NVEDQLVPVV TRLIASLERV AESSSNNELK SSNLGEQSEG SNSTKAPLLG RLSKQEKKKG KDHVIELEEH RKSNDRGNIT DDSAGAGTSL
201: EKECVSSSGR SVTQSFEWKW RRLVQIVLAI DAAICLTLFG IWLAICRGIE CTRS

Arabidopsis Description

PHYL1.1Phytolongin Phyl1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN26]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.